1 | #region License Information
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2 | /* HeuristicLab
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3 | * Copyright (C) 2002-2018 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
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4 | *
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5 | * This file is part of HeuristicLab.
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6 | *
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7 | * HeuristicLab is free software: you can redistribute it and/or modify
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8 | * it under the terms of the GNU General Public License as published by
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9 | * the Free Software Foundation, either version 3 of the License, or
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10 | * (at your option) any later version.
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11 | *
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12 | * HeuristicLab is distributed in the hope that it will be useful,
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13 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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14 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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15 | * GNU General Public License for more details.
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16 | *
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17 | * You should have received a copy of the GNU General Public License
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18 | * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
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19 | */
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20 | #endregion
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21 |
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22 | using System.Collections.Generic;
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23 | using System.Linq;
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24 | using HeuristicLab.Common;
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25 | using HeuristicLab.Core;
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26 | using HeuristicLab.Data;
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27 | using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
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28 | using HeuristicLab.Parameters;
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29 | using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
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30 | using HeuristicLab.Random;
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31 |
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32 | namespace HeuristicLab.Problems.DataAnalysis.Symbolic {
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33 | [Item("SemanticSimilarityCrossover", "An operator which performs subtree swapping based on the notion semantic similarity between subtrees\n" +
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34 | "(criteria: mean of the absolute differences between the estimated output values of the two subtrees, falling into a user-defined range)\n" +
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35 | "- Take two parent individuals P0 and P1\n" +
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36 | "- Randomly choose a node N from the P0\n" +
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37 | "- Find the first node M that satisfies the semantic similarity criteria\n" +
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38 | "- Swap N for M and return P0")]
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39 | public sealed class SymbolicDataAnalysisExpressionSemanticSimilarityCrossover<T> : SymbolicDataAnalysisExpressionCrossover<T> where T : class, IDataAnalysisProblemData {
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40 | private const string SemanticSimilarityRangeParameterName = "SemanticSimilarityRange";
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41 |
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42 | #region Parameter properties
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43 | public IValueParameter<DoubleRange> SemanticSimilarityRangeParameter {
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44 | get { return (IValueParameter<DoubleRange>)Parameters[SemanticSimilarityRangeParameterName]; }
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45 | }
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46 | #endregion
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47 |
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48 | #region Properties
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49 | public DoubleRange SemanticSimilarityRange {
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50 | get { return SemanticSimilarityRangeParameter.Value; }
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51 | }
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52 | #endregion
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53 |
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54 | [StorableConstructor]
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55 | private SymbolicDataAnalysisExpressionSemanticSimilarityCrossover(bool deserializing) : base(deserializing) { }
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56 | private SymbolicDataAnalysisExpressionSemanticSimilarityCrossover(SymbolicDataAnalysisExpressionCrossover<T> original, Cloner cloner) : base(original, cloner) { }
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57 | public SymbolicDataAnalysisExpressionSemanticSimilarityCrossover()
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58 | : base() {
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59 | Parameters.Add(new ValueLookupParameter<DoubleRange>(SemanticSimilarityRangeParameterName, "Semantic similarity interval.", new DoubleRange(0.0001, 10)));
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60 | name = "SemanticSimilarityCrossover";
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61 | }
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62 | public override IDeepCloneable Clone(Cloner cloner) {
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63 | return new SymbolicDataAnalysisExpressionSemanticSimilarityCrossover<T>(this, cloner);
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64 | }
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65 |
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66 | public override ISymbolicExpressionTree Crossover(IRandom random, ISymbolicExpressionTree parent0, ISymbolicExpressionTree parent1) {
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67 | ISymbolicDataAnalysisExpressionTreeInterpreter interpreter = SymbolicDataAnalysisTreeInterpreterParameter.ActualValue;
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68 | List<int> rows = GenerateRowsToEvaluate().ToList();
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69 | T problemData = ProblemDataParameter.ActualValue;
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70 | return Cross(random, parent0, parent1, interpreter, problemData, rows, MaximumSymbolicExpressionTreeDepth.Value, MaximumSymbolicExpressionTreeLength.Value, SemanticSimilarityRange);
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71 | }
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72 |
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73 | /// <summary>
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74 | /// Takes two parent individuals P0 and P1.
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75 | /// Randomly choose a node i from the first parent, then get a node j from the second parent that matches the semantic similarity criteria.
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76 | /// </summary>
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77 | public static ISymbolicExpressionTree Cross(IRandom random, ISymbolicExpressionTree parent0, ISymbolicExpressionTree parent1, ISymbolicDataAnalysisExpressionTreeInterpreter interpreter,
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78 | T problemData, List<int> rows, int maxDepth, int maxLength, DoubleRange range) {
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79 | var crossoverPoints0 = new List<CutPoint>();
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80 | parent0.Root.ForEachNodePostfix((n) => {
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81 | if (n.Parent != null && n.Parent != parent0.Root)
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82 | crossoverPoints0.Add(new CutPoint(n.Parent, n));
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83 | });
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84 |
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85 | var crossoverPoint0 = crossoverPoints0.SampleRandom(random);
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86 | int level = parent0.Root.GetBranchLevel(crossoverPoint0.Child);
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87 | int length = parent0.Root.GetLength() - crossoverPoint0.Child.GetLength();
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88 |
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89 | var allowedBranches = new List<ISymbolicExpressionTreeNode>();
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90 | parent1.Root.ForEachNodePostfix((n) => {
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91 | if (n.Parent != null && n.Parent != parent1.Root) {
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92 | if (n.GetDepth() + level <= maxDepth && n.GetLength() + length <= maxLength && crossoverPoint0.IsMatchingPointType(n))
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93 | allowedBranches.Add(n);
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94 | }
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95 | });
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96 |
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97 | if (allowedBranches.Count == 0)
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98 | return parent0;
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99 |
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100 | var dataset = problemData.Dataset;
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101 |
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102 | // create symbols in order to improvize an ad-hoc tree so that the child can be evaluated
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103 | var rootSymbol = new ProgramRootSymbol();
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104 | var startSymbol = new StartSymbol();
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105 | var tree0 = CreateTreeFromNode(random, crossoverPoint0.Child, rootSymbol, startSymbol);
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106 | List<double> estimatedValues0 = interpreter.GetSymbolicExpressionTreeValues(tree0, dataset, rows).ToList();
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107 | crossoverPoint0.Child.Parent = crossoverPoint0.Parent; // restore parent
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108 | ISymbolicExpressionTreeNode selectedBranch = null;
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109 |
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110 | // pick the first node that fulfills the semantic similarity conditions
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111 | foreach (var node in allowedBranches) {
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112 | var parent = node.Parent;
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113 | var tree1 = CreateTreeFromNode(random, node, startSymbol, rootSymbol); // this will affect node.Parent
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114 | List<double> estimatedValues1 = interpreter.GetSymbolicExpressionTreeValues(tree1, dataset, rows).ToList();
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115 | node.Parent = parent; // restore parent
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116 |
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117 | OnlineCalculatorError errorState;
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118 | double ssd = OnlineMeanAbsoluteErrorCalculator.Calculate(estimatedValues0, estimatedValues1, out errorState);
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119 |
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120 | if (range.Start <= ssd && ssd <= range.End) {
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121 | selectedBranch = node;
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122 | break;
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123 | }
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124 | }
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125 |
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126 | // perform the actual swap
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127 | if (selectedBranch != null)
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128 | Swap(crossoverPoint0, selectedBranch);
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129 | return parent0;
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130 | }
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131 | }
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132 | }
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