# # ChangeLog for branches # # Generated by Trac 1.0.12 # 04/23/24 19:19:12 Mon, 27 Mar 2017 15:27:03 GMT gkronber [14788] * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/Interfaces/TSNEInterfaces/ISpacePartitioningTree.cs (modified) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/SpacePartitioningTree.cs (modified) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/TSNEAlgorithm.cs (modified) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/TSNEStatic.cs (modified) #2700: refactoring Mon, 27 Mar 2017 13:28:48 GMT gkronber [14787] * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/HeuristicLab.Algorithms.DataAnalysis-3.4.csproj (modified) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/Interfaces/TSNEInterfaces/ICell.cs (deleted) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/Interfaces/TSNEInterfaces/IDataPoint.cs (deleted) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/Cell.cs (deleted) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/SpacePartitioningTree.cs (modified) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/VantagePointTree.cs (modified) #2700: more changes while reviewing Mon, 27 Mar 2017 13:15:23 GMT gkronber [14785] * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/HeuristicLab.Algorithms.DataAnalysis-3.4.csproj (modified) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/Interfaces/TSNEInterfaces/ISpacePartitioningTree.cs (moved) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/Interfaces/TSNEInterfaces/IVantagePointTree.cs (moved) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/DataPoint.cs (deleted) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/Distances/IndexedItemDistance.cs (moved) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/PriorityQueue.cs (modified) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/SpacePartitioningTree.cs (moved) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/TSNEAlgorithm.cs (moved) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/TSNEStatic.cs (modified) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/VantagePointTree.cs (moved) #2700: changes and while reviewing Mon, 27 Mar 2017 10:35:03 GMT gkronber [14784] * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/HeuristicLab.Algorithms.DataAnalysis-3.4.csproj (modified) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/Distances/EuclideanDistance.cs (modified) #2700 fixed build fail Sat, 25 Mar 2017 11:22:43 GMT gkronber [14783] * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/Distances/EuclideanDistance.cs (added) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/Distances/EuclidianDistance.cs (deleted) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/SPtree.cs (modified) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/TSNE.cs (modified) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/VPTree.cs (modified) #2700 renamed EuclideanDistance and added some comments Sat, 25 Mar 2017 11:07:14 GMT gkronber [14782] * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/TSNE.cs (moved) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/TSNEStatic.cs (copied) #2700 renamed files Thu, 23 Mar 2017 07:32:09 GMT pkimmesw [14778] * branches/PushGP/HeuristicLab.PushGP/HeuristicLab.Problems.ProgramSynthesis/Push/Selector (added) * branches/PushGP/HeuristicLab.PushGP/HeuristicLab.Problems.ProgramSynthesis/Push/Selector/ICaseSingleObjectiveSelector.cs (added) * branches/PushGP/HeuristicLab.PushGP/HeuristicLab.Problems.ProgramSynthesis/Push/Selector/LexicaseSelector.cs (added) #2665 LexicaseSelector Thu, 23 Mar 2017 00:11:18 GMT pkimmesw [14777] * branches/PushGP/HeuristicLab.PushGP/.vs/PushGp/v14/.suo (modified) * branches/PushGP/HeuristicLab.PushGP/FeatureTests (added) * 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branches/PushGP/HeuristicLab.PushGP/HeuristicLab.Problems.ProgramSynthesis/Push/Views/ExpressionSelectionView.resx (modified) * branches/PushGP/HeuristicLab.PushGP/HeuristicLab.Problems.ProgramSynthesis/Push/Views/PushProgramDebuggerView.Designer.cs (modified) * branches/PushGP/HeuristicLab.PushGP/HeuristicLab.Problems.ProgramSynthesis/Push/Views/PushProgramDebuggerView.cs (modified) * branches/PushGP/HeuristicLab.PushGP/HeuristicLab.Problems.ProgramSynthesis/Push/Views/PushProgramDebuggerView.resx (modified) * branches/PushGP/HeuristicLab.PushGP/HeuristicLab.Tests/Benchmark/Data (deleted) * branches/PushGP/HeuristicLab.PushGP/HeuristicLab.Tests/Benchmark/Example.cs (deleted) * branches/PushGP/HeuristicLab.PushGP/HeuristicLab.Tests/Benchmark/ExampleConverter.cs (deleted) * branches/PushGP/HeuristicLab.PushGP/HeuristicLab.Tests/Benchmark/Problem (deleted) * branches/PushGP/HeuristicLab.PushGP/HeuristicLab.Tests/Benchmark/ProblemTests.cs (modified) * branches/PushGP/HeuristicLab.PushGP/HeuristicLab.Tests/HeuristicLab.Tests.csproj.user (modified) * branches/PushGP/HeuristicLab.PushGP/HeuristicLab.Tests/Interpreter/InterpreterTest.cs (deleted) * branches/PushGP/HeuristicLab.PushGP/PushGP.Cli/Program.cs (modified) * branches/PushGP/HeuristicLab.PushGP/PushGp.sln (modified) * branches/PushGP/HeuristicLab.PushGP/PushGp.sln.DotSettings.user (modified) #2665 simplifier, push solution results view, performance ... Wed, 22 Mar 2017 15:52:36 GMT abeham [14776] * branches/PerformanceComparison/HeuristicLab.Algorithms.MemPR/3.3/Binary/SolutionModel/Univariate/BiasedModelTrainer.cs (modified) * branches/PerformanceComparison/HeuristicLab.Algorithms.MemPR/3.3/Binary/SolutionModel/Univariate/StaticAPI (deleted) * branches/PerformanceComparison/HeuristicLab.Algorithms.MemPR/3.3/Binary/SolutionModel/Univariate/UnbiasedModelTrainer.cs (modified) * branches/PerformanceComparison/HeuristicLab.Algorithms.MemPR/3.3/HeuristicLab.Algorithms.MemPR-3.3.csproj (modified) * branches/PerformanceComparison/HeuristicLab.Algorithms.MemPR/3.3/Interfaces/Interfaces.cs (modified) * branches/PerformanceComparison/HeuristicLab.Algorithms.MemPR/3.3/LinearLinkage/SolutionModel/Univariate/StaticAPI/Trainer.cs (modified) * branches/PerformanceComparison/HeuristicLab.Algorithms.MemPR/3.3/LinearLinkage/SolutionModel/Univariate/UnivariateSolutionModel.cs (modified) * branches/PerformanceComparison/HeuristicLab.Algorithms.MemPR/3.3/Permutation/InversionPathRelinker.cs (added) * branches/PerformanceComparison/HeuristicLab.Algorithms.MemPR/3.3/Permutation/LocalSearch/ExhaustiveInversionImprover.cs (added) * branches/PerformanceComparison/HeuristicLab.Algorithms.MemPR/3.3/Permutation/SolutionModel/Univariate/StaticAPI/Trainer.cs (modified) * branches/PerformanceComparison/HeuristicLab.Analysis (modified) * branches/PerformanceComparison/HeuristicLab.Analysis.FitnessLandscape/3.3/CharacteristicCalculator/AdaptiveWalkCalculator.cs (modified) * branches/PerformanceComparison/HeuristicLab.Analysis/3.3/DataVisualization/GanttData.cs (copied) * branches/PerformanceComparison/HeuristicLab.Analysis/3.3/HeuristicLab.Analysis-3.3.csproj (modified) * branches/PerformanceComparison/HeuristicLab.Analysis/3.3/QualityAnalysis/ExpectedRuntimeHelper.cs (modified) * branches/PerformanceComparison/HeuristicLab.Encodings.BinaryVectorEncoding (copied) * branches/PerformanceComparison/HeuristicLab.Encodings.BinaryVectorEncoding/3.3 (modified) * branches/PerformanceComparison/HeuristicLab.Encodings.BinaryVectorEncoding/3.3/HeuristicLab.Encodings.BinaryVectorEncoding-3.3.csproj (modified) * branches/PerformanceComparison/HeuristicLab.Encodings.BinaryVectorEncoding/3.3/SolutionModel (copied) * branches/PerformanceComparison/HeuristicLab.Encodings.BinaryVectorEncoding/3.3/SolutionModel/SolutionSamplingOperator.cs (added) * branches/PerformanceComparison/HeuristicLab.Algorithms.MemPR/3.3/Binary/SolutionModel/Univariate/BiasedModelTrainer.cs (deleted) * branches/PerformanceComparison/HeuristicLab.Algorithms.MemPR/3.3/Binary/SolutionModel/Univariate/StaticAPI (deleted) * branches/PerformanceComparison/HeuristicLab.Algorithms.MemPR/3.3/Binary/SolutionModel/Univariate/UnbiasedModelTrainer.cs (deleted) * branches/PerformanceComparison/HeuristicLab.Encodings.BinaryVectorEncoding/3.3/SolutionModel/Univariate/UnivariateModel.cs (moved) * branches/PerformanceComparison/HeuristicLab.Encodings.BinaryVectorEncoding/3.3/SolutionModel/Univariate/UnivariateModelTrainer.cs (copied) * branches/PerformanceComparison/HeuristicLab.Encodings.BinaryVectorEncoding/3.3/SolutionModel/Univariate/UnivariateModelTrainingOperator.cs (added) * branches/PerformanceComparison/HeuristicLab.Algorithms.MemPR/3.3/Binary/SolutionModel/Univariate/UnivariateSolutionModel.cs (deleted) * branches/PerformanceComparison/HeuristicLab.Encodings.LinearLinkageEncoding (copied) * branches/PerformanceComparison/HeuristicLab.Encodings.LinearLinkageEncoding/3.4/HeuristicLab.Encodings.LinearLinkageEncoding-3.4.csproj (modified) * branches/PerformanceComparison/HeuristicLab.Optimization.Views (modified) * branches/PerformanceComparison/HeuristicLab.Optimization.Views/3.3/RunCollectionViews/RunCollectionRLDView.cs (modified) * branches/PerformanceComparison/HeuristicLab.Optimization/3.3/HeuristicLab.Optimization-3.3.csproj (modified) * branches/PerformanceComparison/HeuristicLab.Optimization/3.3/Interfaces/ISolutionModel.cs (added) * branches/PerformanceComparison/HeuristicLab.OptimizationExpertSystem.Common/3.3/KnowledgeCenter.cs (modified) * branches/PerformanceComparison/PerformanceComparison.sln (modified) * branches/PerformanceComparison/ProblemInstanceIdentifier/InstanceExplorer.cs (modified) * branches/PerformanceComparison/ProblemInstanceIdentifier/Program.cs (modified) #2457: working on MemPR integration Mon, 20 Mar 2017 14:56:55 GMT gkronber [14771] * branches/PersistenceOverhaul/HeuristicLab.Persistence/3.3/Default/CompositeSerializers/Storable/StorableTypeAttribute.cs (modified) * branches/PersistenceOverhaul/HeuristicLab.Persistence/4.0/Core/Mapper.cs (modified) * branches/PersistenceOverhaul/HeuristicLab.Persistence/4.0/Core/StorableConversionAttribute.cs (added) * branches/PersistenceOverhaul/HeuristicLab.Persistence/4.0/HeuristicLab.Persistence-4.0.csproj (modified) * branches/PersistenceOverhaul/HeuristicLab.Persistence/4.0/Protos/PersistenceMessages.proto (modified) * branches/PersistenceOverhaul/HeuristicLab.Persistence/4.0/Transformers/StorableClassTransformer.cs (modified) * branches/PersistenceOverhaul/HeuristicLab.Persistence/4.0/Transformers/Transformers.cs (modified) * branches/PersistenceOverhaul/HeuristicLab.Tests/HeuristicLab.Persistence-3.3/UseCasesPersistenceNew.cs (modified) #2520 added versions to storable types and implemented conversion ... Mon, 20 Mar 2017 11:07:20 GMT bwerth [14768] * branches/EfficientGlobalOptimization/HeuristicLab.Algorithms.EGO (modified) * branches/EfficientGlobalOptimization/HeuristicLab.Algorithms.EGO/EfficientGlobalOptimizationAlgorithm.cs (modified) * branches/EfficientGlobalOptimization/HeuristicLab.Algorithms.EGO/EgoUtilities.cs (modified) * branches/EfficientGlobalOptimization/HeuristicLab.Algorithms.EGO/HeuristicLab.Algorithms.EGO-3.4.csproj (modified) * branches/EfficientGlobalOptimization/HeuristicLab.Algorithms.EGO/InfillCriteria/ConfidenceBound.cs (modified) * branches/EfficientGlobalOptimization/HeuristicLab.Algorithms.EGO/InfillCriteria/ExpectedImprovement.cs (modified) * branches/EfficientGlobalOptimization/HeuristicLab.Algorithms.EGO/InfillCriteria/RobustImprovement.cs (modified) * branches/EfficientGlobalOptimization/HeuristicLab.Algorithms.EGO/Interfaces/ISurrogateAlgorithm.cs (added) * branches/EfficientGlobalOptimization/HeuristicLab.Algorithms.EGO/Plugin.cs.frame (modified) * branches/EfficientGlobalOptimization/HeuristicLab.Algorithms.EGO/Problems/InfillProblem.cs (modified) * branches/EfficientGlobalOptimization/HeuristicLab.Algorithms.EGO/Properties (modified) #2745 fixed pausing and stopping and namespaces; Added ... Sun, 19 Mar 2017 17:47:00 GMT gkronber [14767] * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/Distances (deleted) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/HeuristicLab.Algorithms.DataAnalysis-3.4.csproj (modified) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/Interfaces/TSNEInterfaces/IDistance.cs (modified) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/Interfaces/TSNEInterfaces/IHeap.cs (deleted) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/Interfaces/TSNEInterfaces/IKernelFunction.cs (deleted) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/Interfaces/TSNEInterfaces/ITSNE.cs (deleted) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/DataPoint.cs (modified) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/Distances/DataPointDistance.cs (modified) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/Distances/DistanceBase.cs (modified) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/Distances/EuclidianDistance.cs (modified) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/Distances/FuctionalDistance.cs (deleted) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/Distances/InnerProductDistance.cs (modified) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/PriorityQueue.cs (modified) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/TSNE.cs (modified) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/TSNEAnalysis.cs (modified) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/TSNEInterfaces (deleted) * branches/TSNE/HeuristicLab.Algorithms.DataAnalysis/3.4/TSNE/VPTree.cs (modified) #2700: made some changes while reviewing the code Sun, 19 Mar 2017 16:17:56 GMT gkronber [14766] * branches/symbreg-factors-2650/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisAlleleFrequencyAnalyzer.cs (modified) * branches/symbreg-factors-2650/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisVariableFrequencyAnalyzer.cs (modified) #2650 reviewed and tested all analyzers and made some smaller changes Sat, 18 Mar 2017 13:39:32 GMT gkronber [14765] * branches/symbreg-factors-2650/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Importer/InfixExpressionParser.cs (modified) * branches/symbreg-factors-2650/HeuristicLab.Tests/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4/InfixExpressionParserTest.cs (modified) #2650 added support for negative weights for parsing expressions with ... Sat, 18 Mar 2017 13:22:46 GMT gkronber [14764] * branches/symbreg-factors-2650/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Formatters/SymbolicDataAnalysisExpressionLatexFormatter.cs (modified) * branches/symbreg-factors-2650/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Formatters/SymbolicDataAnalysisExpressionMATLABFormatter.cs (modified) * branches/symbreg-factors-2650/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Formatters/SymbolicDataAnalysisExpressionMathematicaFormatter.cs (modified) * branches/symbreg-factors-2650/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Formatters/SymbolicDataAnalysisExpressionSmalltalkFormatter.cs (modified) * branches/symbreg-factors-2650/HeuristicLab.Problems.ExternalEvaluation.GP/3.5/ExternalEvaluationSymbolicExpressionTreeStringFormatter.cs (modified) #2650 adapted formatters to handle factor symbols Sat, 18 Mar 2017 12:05:00 GMT gkronber [14763] * branches/symbreg-factors-2650/HeuristicLab.Problems.DataAnalysis/3.4/Interfaces/IDataAnalysisProblemData.cs (modified) #2650 checked usages of IDataAnalysisProblemData and removed TODO comment Sat, 18 Mar 2017 11:47:30 GMT gkronber [14762] * branches/symbreg-factors-2650/HeuristicLab.Problems.DataAnalysis.Views/3.4/Regression/RegressionSolutionVariableImpactsView.Designer.cs (modified) * branches/symbreg-factors-2650/HeuristicLab.Problems.DataAnalysis.Views/3.4/Regression/RegressionSolutionVariableImpactsView.cs (modified) * branches/symbreg-factors-2650/HeuristicLab.Problems.DataAnalysis/3.4/Implementation/Regression/RegressionSolutionVariableImpactsCalculator.cs (modified) #2650: added option to specify replacement method for factor variables Sat, 18 Mar 2017 11:17:13 GMT gkronber [14761] * branches/symbreg-factors-2650/HeuristicLab.Algorithms.DataAnalysis/3.4/NonlinearRegression/NonlinearRegression.cs (modified) * branches/symbreg-factors-2650/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Formatters/InfixExpressionFormatter.cs (modified) * branches/symbreg-factors-2650/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Importer/InfixExpressionParser.cs (modified) * branches/symbreg-factors-2650/HeuristicLab.Tests/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4/InfixExpressionParserTest.cs (modified) #2650 infix formatter also produces factor variable weights, infix ... Sat, 18 Mar 2017 10:04:41 GMT gkronber [14760] * branches/symbreg-factors-2650/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisModelComplexityCalculator.cs (modified) #2650 added a case for BinaryFactorVariables to ComplexityCalculator Sat, 18 Mar 2017 09:54:13 GMT gkronber [14759] * branches/symbreg-factors-2650/HeuristicLab.Problems.DataAnalysis.Symbolic.Views/3.4/Symbols/LaggedVariableView.Designer.cs (modified) * branches/symbreg-factors-2650/HeuristicLab.Problems.DataAnalysis.Symbolic.Views/3.4/Symbols/VariableView.Designer.cs (modified) * branches/symbreg-factors-2650/HeuristicLab.Problems.DataAnalysis.Symbolic.Views/3.4/Symbols/VariableView.cs (modified) * branches/symbreg-factors-2650/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Symbols/VariableBase.cs (modified) #2650 added a way to set the probability of variable changes via the GUI