# # ChangeLog for branches/HeuristicLab.EvolutionTracking # # Generated by Trac 1.0.12 # 12/22/24 02:26:32 Wed, 20 Aug 2014 08:35:27 GMT bburlacu [11291] * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisBottomUpDiversityAnalyzer.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisPhenotypicDiversityAnalyzer.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SimilarityCalculators/PhenotypicSimilarityCalculator.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisProblem.cs (modified) #1772: Added license files and removed unnecessary code from ... Tue, 19 Aug 2014 14:05:16 GMT bburlacu [11288] * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/Analyzers/GenealogyAnalyzer.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/Operators/BeforeManipulatorOperator.cs (modified) #1772: Fix calculation of successful offspring ratios in the ... Tue, 12 Aug 2014 14:41:56 GMT bburlacu [11278] * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/Analyzers/GenealogyAnalyzer.cs (modified) #1772: GenealogyAnalyzer: add histogram and heatmap for absolute ... Tue, 05 Aug 2014 18:59:25 GMT bburlacu [11272] * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisBottomUpDiversityAnalyzer.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisPhenotypicDiversityAnalyzer.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisProblem.cs (modified) #1772: Adjusted SolutionVariableName for symbolic data analysis ... Tue, 05 Aug 2014 14:34:09 GMT bburlacu [11271] * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisBottomUpDiversityAnalyzer.cs (added) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisPhenotypicDiversityAnalyzer.cs (added) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SimilarityCalculators/PhenotypicSimilarityCalculator.cs (added) #1772: Added specialized diversity analyzers (phenotypic and bottom- ... Mon, 04 Aug 2014 12:50:52 GMT bburlacu [11262] * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking.Views/3.4/GenealogyGraphChart.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking.Views/3.4/HeuristicLab.EvolutionTracking.Views-3.4.csproj (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/Analyzers/GenealogyAnalyzer.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/GenealogyGraph/GenealogyGraphNode.cs (modified) #1772: Added missing Storable constructor to GenealogyGraphNode ... Sat, 02 Aug 2014 18:25:20 GMT bburlacu [11257] * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/Analyzers/GenealogyAnalyzer.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/GenealogyGraph/GenealogyGraph.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/Operators/BeforeManipulatorOperator.cs (modified) #1772: - GenealogyAnalyzer: compute relative success ratios per ... Thu, 31 Jul 2014 15:11:39 GMT bburlacu [11253] * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking.Views/3.4/GenealogyGraphView.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking.Views/3.4/HeuristicLab.EvolutionTracking.Views-3.4.csproj (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/Analyzers/GenealogyAnalyzer.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/DirectedGraph (deleted) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/GenealogyGraph/GenealogyGraph.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/GenealogyGraph/GenealogyGraphNode.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/GenealogyGraph/Interfaces/IGenealogyGraphArc.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/GenealogyGraph/Interfaces/IGenealogyGraphNode.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/HeuristicLab.EvolutionTracking-3.4.csproj (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/Operators/BeforeCrossoverOperator.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/Operators/BeforeManipulatorOperator.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic.Views/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic.Views-3.4.csproj (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic.Views/3.4/Tracking/FragmentGraphView.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic.Views/3.4/Tracking/SymboldDataAnalysisGenealogyView.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic.Views/3.4/Tracking/SymbolicDataAnalysisExpressionLineageExplorerView.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisPopulationDiversityAnalyzer.cs (deleted) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4.csproj (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Tracking/SymbolicDataAnalysisExpressionAfterCrossoverOperator.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Tracking/SymbolicDataAnalysisExpressionAfterManipulatorOperator.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Tracking/SymbolicDataAnalysisExpressionBeforeManipulatorOperator.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Tracking/SymbolicDataAnalysisExpressionTracing.cs (modified) #1772: Ported the rest of the changes to the DirectedGraph and Vertex ... Tue, 29 Jul 2014 23:41:54 GMT bburlacu [11233] * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/Analyzers/GenealogyAnalyzer.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/DirectedGraph (moved) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/DirectedGraph/Arc.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/DirectedGraph/DirectedGraph.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/DirectedGraph/Interfaces/IArc.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/DirectedGraph/Interfaces/IDirectedGraph.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/DirectedGraph/Interfaces/IVertex.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/DirectedGraph/Vertex.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/GenealogyGraph/GenealogyGraph.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/GenealogyGraph/GenealogyGraphArc.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/GenealogyGraph/GenealogyGraphNode.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/GenealogyGraph/Interfaces/IGenealogyGraph.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/GenealogyGraph/Interfaces/IGenealogyGraphArc.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/GenealogyGraph/Interfaces/IGenealogyGraphNode.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/Operators/BeforeCrossoverOperator.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/Operators/BeforeManipulatorOperator.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic.Views/3.4/Tracking/SymboldDataAnalysisGenealogyView.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4.csproj (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisProblem.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Tracking/SymbolicDataAnalysisExpressionAfterCrossoverOperator.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Tracking/SymbolicDataAnalysisExpressionAfterManipulatorOperator.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Tracking/SymbolicDataAnalysisExpressionBeforeCrossoverOperator.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Tracking/SymbolicDataAnalysisExpressionBeforeManipulatorOperator.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Tracking/SymbolicDataAnalysisExpressionTracing.cs (modified) #1772: Worked towards integrating the new graph api with the tracking ... Tue, 29 Jul 2014 18:03:15 GMT bburlacu [11232] * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisInternalDiversityAnalyzer.cs (copied) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/DirectedGraph (copied) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4.csproj (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Interpreter/SymbolicDataAnalysisExpressionTreeLinearInterpreter.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Matching/SymbolicExpressionTreeMaxCommonSequenceCalculator.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SimilarityCalculators (copied) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisProblem.cs (modified) #1772: Merged latest changes (directed graph and bottom up distance ... Tue, 29 Jul 2014 17:46:48 GMT bburlacu [11231] * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4 (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisExpressionTreeMatching.cs (deleted) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/TreeDistance (deleted) #1772: Removed obsolete files. Tue, 29 Jul 2014 00:17:14 GMT bburlacu [11227] * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking.Views/3.4/HeuristicLab.EvolutionTracking.Views-3.4.csproj (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/Analyzers/GenealogyAnalyzer.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/HeuristicLab.EvolutionTracking-3.4.csproj (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/Operators/AfterCrossoverOperator.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/Operators/AfterManipulatorOperator.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/Operators/BeforeCrossoverOperator.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/Operators/BeforeManipulatorOperator.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/Operators/EvolutionTrackingOperator.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisGenealogyAnalyzer.cs (modified) #1772: Added storable attributes to all the tracking operators. Added ... Fri, 18 Jul 2014 14:40:21 GMT bburlacu [11209] * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/TreeDistance/BottomUpDistanceCalculator.cs (modified) #1772: Improved performance of the BottomUpDistanceCalculator Fri, 18 Jul 2014 14:39:50 GMT bburlacu [11208] * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Views (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Views/3.4/Formatters/SymbolicExpressionTreeLatexFormatter.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Views/3.4/GraphicalSymbolicExpressionTreeView.Designer.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Views/3.4/GraphicalSymbolicExpressionTreeView.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Views/3.4/LayoutEngines/BoxesLayoutEngine.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Views/3.4/LayoutEngines/LayoutNode.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Views/3.4/Plugin.cs.frame (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Views/3.4/Properties/AssemblyInfo.cs.frame (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Views/3.4/SymbolView.Designer.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Views/3.4/SymbolView.cs (modified) * 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branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.TravelingSalesman/3.3/Properties/AssemblyInfo.cs.frame (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.TravelingSalesman/3.3/SimilarityCalculators/TSPSimilarityCalculator.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.TravelingSalesman/3.3/TravelingSalesmanProblem.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Tracking.sln (modified) #1772: Merged trunk changes. Wed, 16 Jul 2014 14:32:48 GMT bburlacu [11197] * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking.Views/3.4/HeuristicLab.EvolutionTracking.Views-3.4.csproj (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic.Views/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic.Views-3.4.csproj (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisPopulationDiversityAnalyzer.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4.csproj (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Interfaces/IDistanceCalculator.cs (added) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisExpressionTreeSimilarityCalculator.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/TreeDistance/BottomUpDistanceCalculator.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/TreeDistance/IsomorphicTreeDistance.cs (added) #1772: Separated tree distance calculations in different classes ... Wed, 09 Jul 2014 14:40:29 GMT bburlacu [11165] * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking.Views/3.4/HeuristicLab.EvolutionTracking.Views-3.4.csproj (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic.Views/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic.Views-3.4.csproj (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/TreeDistance/BottomUpDistanceCalculator.cs (modified) #1772: Added fix to improve accuracy of bottom-up tree distance. Sun, 22 Jun 2014 21:10:21 GMT bburlacu [11032] * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/Analyzers/GenealogyAnalyzer.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/Operators/BeforeManipulatorOperator.cs (modified) #1772: Minor change to the GenealogyAnalyzer (remove properties for ... Tue, 17 Jun 2014 08:30:25 GMT bburlacu [11023] * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/TreeDistance/BottomUpDistanceCalculator.cs (modified) #1772: Small cosmetic changes in BottomUpDistanceCalculator.cs Mon, 16 Jun 2014 13:37:23 GMT bburlacu [11021] * branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking/3.4/DirectedGraph/DirectedGraph.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/TreeDistance/BottomUpDistanceCalculator.cs (modified) #1772: Added ExportDot method to DirectedGraph. Worked on the ... Sun, 15 Jun 2014 21:52:13 GMT bburlacu [11016] * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Views/3.4/Formatters/SymbolicExpressionTreeLatexFormatter.cs (modified) * branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/TreeDistance/BottomUpDistanceCalculator.cs (modified) #1772: Made some progress with the `BottomUpDistanceCalculator`, ...