# # ChangeLog for branches/2925_AutoDiffForDynamicalModels # # Generated by Trac 1.0.12 # 12/01/24 12:24:59 Sat, 15 Dec 2018 11:07:16 GMT gkronber [16386] * branches/2925_AutoDiffForDynamicalModels (modified) * branches/2925_AutoDiffForDynamicalModels/.editorconfig (modified) * branches/2925_AutoDiffForDynamicalModels/Build.cmd (modified) * branches/2925_AutoDiffForDynamicalModels/Build.ps1 (copied) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Algorithms.ALPS (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Algorithms.DataAnalysis (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Algorithms.DataAnalysis.Views (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Algorithms.DataAnalysis/3.4 (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Algorithms.DataAnalysis/3.4/GBM/GradientBoostingRegressionAlgorithm.cs (modified) * 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branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Tests/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4/SymbolicDataAnalysisExpressionTreeSimplifierTest.cs (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Tests/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4/SymbolicExpressionTreeBottomUpSimilarityCalculatorTest.cs (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Tests/HeuristicLab.Tests.csproj (modified) #2925 merged changes r15972:16382 from trunk to branch Tue, 27 Nov 2018 07:21:13 GMT gkronber [16329] * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/OdeParameterIdentification.cs (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/Problem.cs (modified) #2925: made several extensions in relation to blood glucose ... Mon, 05 Nov 2018 12:19:38 GMT gkronber [16275] * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/Problem.cs (modified) #2925: changed random initialization of parameters and fixed two non- ... Thu, 01 Nov 2018 18:39:05 GMT gkronber [16268] * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/HeuristicLab.Problems.DynamicalSystemsModelling-3.3.csproj (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/OdeParameterIdentification.cs (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/Problem.cs (modified) #2925 created a separate algorithm (similar to NLR but for parameter ... Wed, 24 Oct 2018 17:58:44 GMT gkronber [16256] * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/CVODES.cs (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/HeuristicLab.Problems.DynamicalSystemsModelling-3.3.csproj (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/sundials_cvodes-x64.dll (added) #2925: added x64 version of CVODES as well as dispatching code for ... Wed, 24 Oct 2018 16:21:40 GMT gkronber [16254] * branches/2925_AutoDiffForDynamicalModels/AutoDiffForDynamicalModelsTest/TestCvodes.cs (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/CVODES.cs (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/HeuristicLab.Problems.DynamicalSystemsModelling-3.3.csproj (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/sundials_cvodes-x86.dll (moved) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/sundials_nvecserial-x86.dll (moved) #2925: made usage of x86 native library explicit. Wed, 24 Oct 2018 16:16:43 GMT gkronber [16253] * branches/2925_AutoDiffForDynamicalModels/AutoDiffForDynamicalModelsTest/TestCvodes.cs (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/CVODES.cs (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/Problem.cs (modified) #2925: fixed memory leak and fixed bug in determination of ... Tue, 23 Oct 2018 17:49:16 GMT gkronber [16251] * branches/2925_AutoDiffForDynamicalModels/AutoDiffForDynamicalModelsTest/AutoDiffForDynamicalModelsTest.csproj (modified) * branches/2925_AutoDiffForDynamicalModels/AutoDiffForDynamicalModelsTest/Genetic Algorithm (GA).hl (added) * branches/2925_AutoDiffForDynamicalModels/AutoDiffForDynamicalModelsTest/TestGA.cs (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/CVODES.cs (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/Problem.cs (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/Vector.cs (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab/3.3/HeuristicLab-3.3.csproj (modified) #2925: implemented interface to CVODES solver with forward ... Mon, 22 Oct 2018 16:35:27 GMT gkronber [16250] * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/Problem.cs (modified) #2925 preparations to switch between HL ODE solver and CVODES Mon, 22 Oct 2018 08:04:28 GMT gkronber [16249] * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/HeuristicLab.Problems.DynamicalSystemsModelling-3.3.csproj (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/Problem.cs (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/Vector.cs (added) #2925: extracted Vector into a separate class Mon, 22 Oct 2018 08:02:42 GMT gkronber [16248] * branches/2925_AutoDiffForDynamicalModels/AutoDiffForDynamicalModelsTest/TestCvodes.cs (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/CVODES.cs (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/HeuristicLab.Problems.DynamicalSystemsModelling-3.3.csproj (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/Problem.cs (modified) #2925 extracted CVODES external methods into a separate class Fri, 19 Oct 2018 14:05:20 GMT gkronber [16246] * branches/2925_AutoDiffForDynamicalModels/AutoDiffForDynamicalModelsTest/AutoDiffForDynamicalModelsTest.csproj (modified) * branches/2925_AutoDiffForDynamicalModels/AutoDiffForDynamicalModelsTest/TestCvodes.cs (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/Problem.cs (modified) #2925: working example with forward sensitivity analysis Fri, 19 Oct 2018 12:22:01 GMT gkronber [16245] * branches/2925_AutoDiffForDynamicalModels/AutoDiffForDynamicalModelsTest/TestCvodes.cs (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/Problem.cs (modified) #2925 worked on integration of CVODES library Wed, 10 Oct 2018 10:00:19 GMT gkronber [16227] * branches/2925_AutoDiffForDynamicalModels/AutoDiffForDynamicalModelsTest/TestCvodes.cs (modified) #2925: changed test case to linear oscillator Wed, 10 Oct 2018 09:49:47 GMT gkronber [16226] * branches/2925_AutoDiffForDynamicalModels/AutoDiffForDynamicalModelsTest/TestCvodes.cs (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/Problem.cs (modified) #2925: added vector access methods Wed, 10 Oct 2018 09:22:43 GMT gkronber [16225] * branches/2925_AutoDiffForDynamicalModels/AutoDiffForDynamicalModelsTest (added) * branches/2925_AutoDiffForDynamicalModels/AutoDiffForDynamicalModelsTest/AutoDiffForDynamicalModelsTest.csproj (added) * branches/2925_AutoDiffForDynamicalModels/AutoDiffForDynamicalModelsTest/Properties (added) * branches/2925_AutoDiffForDynamicalModels/AutoDiffForDynamicalModelsTest/Properties/AssemblyInfo.cs (added) * branches/2925_AutoDiffForDynamicalModels/AutoDiffForDynamicalModelsTest/TestCvodes.cs (added) * branches/2925_AutoDiffForDynamicalModels/AutoDiffForDynamicalModelsTest/packages.config (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab 3.3.sln (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/HeuristicLab.Problems.DynamicalSystemsModelling-3.3.csproj (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/Problem.cs (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/sundials_cvodes.dll (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/sundials_nvecserial.dll (added) #2925: first working version of CVODES integration Tue, 09 Oct 2018 14:49:05 GMT gkronber [16222] * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/Problem.cs (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/sundials (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/sundials/cvodes-3.2.0.tar.gz (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/sundials/include (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/sundials/include/cvodes (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/sundials/include/cvodes/cvodes.h (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/sundials/include/cvodes/cvodes_bandpre.h (added) * 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Mon, 08 Oct 2018 06:17:03 GMT gkronber [16215] * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/Problem.cs (modified) #2925: added sin and cos functions Sat, 06 Oct 2018 08:00:22 GMT gkronber [16214] * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/Problem.cs (modified) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/data (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/data/# README.txt (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/data/1165893s1.mpg (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/data/Schmidt.SOM.pdf (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/data/circle_1.txt (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/data/double_linear_h_1.txt (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/data/double_pend_h_1.txt (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/data/lienar_a_1.txt (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/data/linear_h_1.txt (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/data/pendulum_a_1.txt (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/data/pendulum_h_1.txt (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/data/real_double_linear_h_1.txt (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/data/real_double_pend_h_1.txt (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/data/real_linear_a_1.txt (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/data/real_linear_h_1.txt (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/data/real_pend_a_1.txt (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/data/real_pend_circle_1.txt (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/data/real_pend_h_1.txt (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/data/sphere_1.txt (added) * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/data/table of datasets.png (added) #2925 added datasets from supplementary material for "distilling ... Tue, 18 Sep 2018 09:28:37 GMT gkronber [16155] * branches/2925_AutoDiffForDynamicalModels/HeuristicLab.Problems.DynamicalSystemsModelling/3.3/Problem.cs (modified) #2925: allow tuning individual parameter vectors for episodes (using ...