# # ChangeLog for branches/2886_SymRegGrammarEnumeration/ExpressionClustering # # Generated by Trac 1.0.12 # 11/28/24 05:29:40 Thu, 28 Jun 2018 09:35:13 GMT bburlacu [15974] * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/ExpressionClustering.csproj (modified) * branches/2886_SymRegGrammarEnumeration/HeuristicLab.Algorithms.DataAnalysis.SymRegGrammarEnumeration/Analysis/RSquaredEvaluator.cs (modified) * branches/2886_SymRegGrammarEnumeration/HeuristicLab.Algorithms.DataAnalysis.SymRegGrammarEnumeration/GrammarEnumeration/Grammar.cs (modified) * branches/2886_SymRegGrammarEnumeration/HeuristicLab.Algorithms.DataAnalysis.SymRegGrammarEnumeration/GrammarEnumeration/GrammarEnumerationAlgorithm.cs (modified) * branches/2886_SymRegGrammarEnumeration/HeuristicLab.Algorithms.DataAnalysis.SymRegGrammarEnumeration/GrammarEnumeration/LruCache.cs (added) * branches/2886_SymRegGrammarEnumeration/HeuristicLab.Algorithms.DataAnalysis.SymRegGrammarEnumeration/GrammarEnumeration/SearchDataStructure.cs (modified) * branches/2886_SymRegGrammarEnumeration/HeuristicLab.Algorithms.DataAnalysis.SymRegGrammarEnumeration/GrammarEnumeration/Sentence.cs (modified) * branches/2886_SymRegGrammarEnumeration/HeuristicLab.Algorithms.DataAnalysis.SymRegGrammarEnumeration/GrammarEnumeration/Symbol.cs (modified) * branches/2886_SymRegGrammarEnumeration/HeuristicLab.Algorithms.DataAnalysis.SymRegGrammarEnumeration/HeuristicLab.Algorithms.DataAnalysis.SymRegGrammarEnumeration.csproj (modified) * branches/2886_SymRegGrammarEnumeration/Test/HeuristicLab.snk (added) * branches/2886_SymRegGrammarEnumeration/Test/Test.csproj (modified) #2886: implement LRU cache for storing search nodes, introduce ... Tue, 08 May 2018 13:00:53 GMT bburlacu [15929] * branches/2288_HeuristicLab.VariableInteractionNetworks (moved) * branches/2288_HeuristicLab.VariableInteractionNetworks/HeuristicLab.VariableInteractionNetworks.Views/3.3/CreateTargetVariationExperiment.cs (copied) * branches/2288_HeuristicLab.VariableInteractionNetworks/HeuristicLab.VariableInteractionNetworks.Views/3.3/CreateTargetVariationExperimentDialog.Designer.cs (copied) * branches/2288_HeuristicLab.VariableInteractionNetworks/HeuristicLab.VariableInteractionNetworks.Views/3.3/CreateTargetVariationExperimentDialog.cs (copied) * branches/2288_HeuristicLab.VariableInteractionNetworks/HeuristicLab.VariableInteractionNetworks.Views/3.3/HeuristicLab.VariableInteractionNetworks.Views-3.3.csproj (modified) * branches/HeuristicLab.VariableInteractionNetworks/HeuristicLab.VariableInteractionNetworks/3.3/CreateTargetVariationExperiment.cs (deleted) * branches/HeuristicLab.VariableInteractionNetworks/HeuristicLab.VariableInteractionNetworks/3.3/CreateTargetVariationExperimentDialog.Designer.cs (deleted) * branches/HeuristicLab.VariableInteractionNetworks/HeuristicLab.VariableInteractionNetworks/3.3/CreateTargetVariationExperimentDialog.cs (deleted) * branches/2288_HeuristicLab.VariableInteractionNetworks/HeuristicLab.VariableInteractionNetworks/3.3/HeuristicLab.VariableInteractionNetworks-3.3.csproj (modified) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/ExpressionClustering.csproj (modified) #2288: Rename branch and update references. Mon, 30 Apr 2018 18:24:17 GMT gkronber [15924] * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/ExpressionClustering.csproj (modified) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/Program.cs (modified) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering_R/ClusteringScript.R (modified) #2886 remove obsolete code in C# program for the evaluation of ... Fri, 13 Apr 2018 14:48:56 GMT gkronber [15903] * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/ExpressionClustering.csproj (modified) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/Program.cs (modified) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering_R (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering_R/ClusteringScript.R (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering_R/ExpressionClustering_R.Rproj (added) #2886 worked on cluster analysis / visualization for GPTP Thu, 15 Mar 2018 09:41:20 GMT gkronber [15842] * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/ExpressionClustering.csproj (modified) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/Flann.cs (modified) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/Program.cs (modified) * branches/2886_SymRegGrammarEnumeration/HeuristicLab.Algorithms.DataAnalysis.SymRegGrammarEnumeration/GrammarEnumeration/GrammarEnumerationAlgorithm.cs (modified) #2886: added clustering of functions and output of clusters, fixed ... Wed, 14 Mar 2018 16:48:39 GMT gkronber [15841] * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/Flann.cs (modified) #2886 fixed FLANNParameters structure Wed, 14 Mar 2018 10:43:42 GMT gkronber [15840] * branches/2886_SymRegGrammarEnumeration/ExpressionClustering (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/App.config (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/ExpressionClustering.csproj (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/Flann.cs (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/Program.cs (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/Properties (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/Properties/AssemblyInfo.cs (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/README.txt (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann-1.7.1.dll (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/Uninstall.exe (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/algorithms (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/algorithms/all_indices.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/algorithms/autotuned_index.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/algorithms/composite_index.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/algorithms/dist.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/algorithms/hierarchical_clustering_index.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/algorithms/kdtree_cuda_3d_index.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/algorithms/kdtree_cuda_builder.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/algorithms/kdtree_index.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/algorithms/kdtree_single_index.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/algorithms/kmeans_index.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/algorithms/linear_index.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/algorithms/lsh_index.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/algorithms/nn_index.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/config.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/defines.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/flann.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/flann.hpp (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/general.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/io (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/io/hdf5.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/mpi (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/mpi/client.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/mpi/index.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/mpi/matrix.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/mpi/queries.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/mpi/server.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/nn (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/nn/ground_truth.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/nn/index_testing.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/nn/simplex_downhill.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/tbb (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/tbb/bodies.hpp (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/util (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/util/allocator.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/util/any.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/util/cuda (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/util/cuda/heap.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/util/cuda/result_set.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/util/cutil_math.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/util/dynamic_bitset.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/util/heap.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/util/logger.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/util/lsh_table.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/util/matrix.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/util/object_factory.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/util/params.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/util/random.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/util/result_set.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/util/sampling.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/util/saving.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/include/flann/util/timer.h (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/lib (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/lib/flann-gd.lib (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/lib/flann.lib (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/lib/flann_cpp_s-gd.lib (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/lib/flann_cpp_s.lib (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/lib/flann_cuda_s-gd.lib (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/lib/flann_cuda_s.lib (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/lib/flann_s-gd.lib (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/lib/flann_s.lib (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/lib/pkgconfig (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/lib/pkgconfig/flann.pc (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/share (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/share/doc (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/share/doc/flann (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/share/doc/flann/manual.pdf (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/share/flann (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/share/flann/matlab (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/share/flann/matlab/flann-gd.dll (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/flann/share/flann/matlab/flann.dll (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/happieclust-1.6.0-win (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/happieclust-1.6.0-win.zip (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/happieclust-1.6.0-win/cygwin1.dll (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/happieclust-1.6.0-win/evaluations.csv (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/happieclust-1.6.0-win/evaluations.csv.gz (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/happieclust-1.6.0-win/happieclust.exe (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/happieclust-1.6.0-win/happieclust.exe.stackdump (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/happieclust-1.6.0-win/happieclust_matrix.bat (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/happieclust-1.6.0-win/nc2cdt.exe (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/happieclust-1.6.0-win/nc2tab.exe (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/happieclust-1.6.0-win/symreg.nc (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/happieclust-1.6.0-win/tab2nc.exe (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/happieclust-1.6.0-win/tab2nc_script.txt (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/msvcp100.dll (added) * branches/2886_SymRegGrammarEnumeration/ExpressionClustering/msvcr100.dll (added) * branches/2886_SymRegGrammarEnumeration/SymRegGrammarEnumeration.sln (modified) #2886 added utility console program for clustering of expressions