library(largeVis) library(ggplot2) eval7 <- read.csv2("c:/Users/P24581/Desktop/evaluations_2018-04-11_12-50_TreeSize-7.csv",header = TRUE, sep = ";", dec=",") eval7_qs <- eval7[,3] eval7_x <- eval7[,5:105] lv <- largeVis(eval7_x, dim=2, K = 50, n_trees = 50) # TODO scale? clusters <- hdbscan(lv, minPts = 3, K=30) m <- data.frame(x=t(lv$coords)[,1], y=t(lv$coords)[,2], c=clusters$clusters, q=eval7_qs) ggplot(data=m, aes(x=x, y=y)) + geom_point(aes(color=q))