Changeset 10208


Ignore:
Timestamp:
12/09/13 16:56:03 (6 years ago)
Author:
ascheibe
Message:

#1886

  • added x64 configurations for qhull
  • added a wrapper for qhull volume calculation
  • removed old volume calculation code
Location:
branches/HeuristicLab.Analysis.AlgorithmBehavior
Files:
4 added
20 edited

Legend:

Unmodified
Added
Removed
  • branches/HeuristicLab.Analysis.AlgorithmBehavior/AlgorithmBehaviorUnitTests/VolumeCalculationTest.cs

    r10207 r10208  
    1 using System;
     1#region License Information
     2/* HeuristicLab
     3 * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
     4 *
     5 * This file is part of HeuristicLab.
     6 *
     7 * HeuristicLab is free software: you can redistribute it and/or modify
     8 * it under the terms of the GNU General Public License as published by
     9 * the Free Software Foundation, either version 3 of the License, or
     10 * (at your option) any later version.
     11 *
     12 * HeuristicLab is distributed in the hope that it will be useful,
     13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
     14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     15 * GNU General Public License for more details.
     16 *
     17 * You should have received a copy of the GNU General Public License
     18 * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
     19 */
     20#endregion
     21
     22using System;
    223using System.Collections.Generic;
    324using HeuristicLab.Analysis.AlgorithmBehavior.Analyzers;
     
    2445
    2546      var convexHull = LPHull.Calculate(points.ToArray());
    26       double volume = ConvexHullMeasures.CalculateVolumeNew(convexHull);
     47      double volume = ConvexHullMeasures.CalculateVolume(convexHull);
    2748      volume = Math.Round(volume, 6);
    2849      //volume computed with R and the geometry package which uses qhull
    2950      Assert.IsTrue(volume.IsAlmost(7.960698));
    30       volume = ConvexHullMeasures.CalculateVolumeNew(points);
     51      volume = ConvexHullMeasures.CalculateVolume(points);
    3152      volume = Math.Round(volume, 6);
     53      Assert.IsTrue(volume.IsAlmost(7.960698));
     54    }
     55
     56
     57    [TestMethod]
     58    public void TestVolumeCalculationQhull() {
     59      const int numPoints = 8;
     60      const int dimension = 3;
     61
     62      var points = new List<double[]>();
     63      points.Add(new double[] { -0.72045174, 1.44667601, -1.75159125 });
     64      points.Add(new double[] { -0.67521503, 0.61127293, -0.33962646 });
     65      points.Add(new double[] { 2.02392510, -0.41962562, -1.12211942 });
     66      points.Add(new double[] { 0.02647963, -0.24983950, -0.47038916 });
     67      points.Add(new double[] { 0.61548803, -0.25039511, 0.97745744 });
     68      points.Add(new double[] { -1.65142294, -0.09537136, 1.93154268 });
     69      points.Add(new double[] { 1.12618422, 0.49384888, 0.05286691 });
     70      points.Add(new double[] { -0.12506782, -2.29161965, -0.09710301 });
     71
     72      double volume = QhullWrapper.CalculateVolume(points);
     73      volume = Math.Round(volume, 6);
     74      //volume computed with R and the geometry package which uses qhull
    3275      Assert.IsTrue(volume.IsAlmost(7.960698));
    3376    }
  • branches/HeuristicLab.Analysis.AlgorithmBehavior/HeuristicLab.Analysis.AlgorithmBehavior.Analyzers/3.3/HeuristicLab.Analysis.AlgorithmBehavior.Analyzers-3.3.csproj

    r10200 r10208  
    106106  </ItemGroup>
    107107  <ItemGroup>
     108    <Compile Include="QhullWrapper.cs" />
    108109    <Compile Include="DoubleArrayExtensions.cs" />
    109110    <Compile Include="FractionClass.cs" />
  • branches/HeuristicLab.Analysis.AlgorithmBehavior/PerformanceTests/Program.cs

    r10200 r10208  
    1 using System;
     1#region License Information
     2/* HeuristicLab
     3 * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
     4 *
     5 * This file is part of HeuristicLab.
     6 *
     7 * HeuristicLab is free software: you can redistribute it and/or modify
     8 * it under the terms of the GNU General Public License as published by
     9 * the Free Software Foundation, either version 3 of the License, or
     10 * (at your option) any later version.
     11 *
     12 * HeuristicLab is distributed in the hope that it will be useful,
     13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
     14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     15 * GNU General Public License for more details.
     16 *
     17 * You should have received a copy of the GNU General Public License
     18 * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
     19 */
     20#endregion
     21
     22using System;
     23using System.Collections.Generic;
    224using System.Diagnostics;
    325using System.Linq;
     
    729  class Program {
    830    static void Main(string[] args) {
    9       TestVolCalc();
     31      // TestSimpleVolumeCalculation();
     32      //   TestVolCalc();
     33      //TestQHullVolumeCalculation();
     34      TestQhull();
    1035    }
    1136
     37    public static void TestQhull() {
     38      var points = new List<double[]>();
     39      points.Add(new double[] { -0.72045174, 1.44667601, -1.75159125 });
     40      points.Add(new double[] { -0.67521503, 0.61127293, -0.33962646 });
     41      points.Add(new double[] { 2.02392510, -0.41962562, -1.12211942 });
     42      points.Add(new double[] { 0.02647963, -0.24983950, -0.47038916 });
     43      points.Add(new double[] { 0.61548803, -0.25039511, 0.97745744 });
     44      points.Add(new double[] { -1.65142294, -0.09537136, 1.93154268 });
     45      points.Add(new double[] { 1.12618422, 0.49384888, 0.05286691 });
     46      points.Add(new double[] { -0.12506782, -2.29161965, -0.09710301 });
     47
     48      double volume = QhullWrapper.CalculateVolume(points);
     49      volume = Math.Round(volume, 6);
     50      Console.WriteLine("Volume is: " + volume);
     51    }
     52
     53
    1254    public static void TestVolCalc() {
    13       int dim = 4;
    14       int size = 20;
     55      int dim = 3;
     56      int size = 8;
    1557      var data = CreateRandomData(size, dim);
    1658      var dataList = data.ToList();
     
    2769      //calculate volume of convex hull
    2870      watch.Start();
    29       double volume = ConvexHullMeasures.CalculateVolumeNew(convexHull);
     71      double volume = ConvexHullMeasures.CalculateVolume(convexHull);
    3072      watch.Stop();
    3173      Console.WriteLine("Volume calculation of convex hull took : " + watch.Elapsed.TotalSeconds + " seconds.");
     
    3577      //do volume calculation from the whole data set
    3678      watch.Start();
    37       volume = ConvexHullMeasures.CalculateVolumeNew(dataList);
     79      volume = ConvexHullMeasures.CalculateVolume(dataList);
    3880      watch.Stop();
    3981      Console.WriteLine("Volume calculation of whole data set took : " + watch.Elapsed.TotalSeconds + " seconds.");
     
    4789      Console.WriteLine("Volume calculation of whole data set with lrs took : " + watch.Elapsed.TotalSeconds + " seconds.");
    4890      Console.WriteLine("Volume of whole data with lrs is: " + volume);
     91    }
     92
     93    private static void TestQHullVolumeCalculation() {
     94      const int numPoints = 8;
     95      const int dimension = 3;
     96
     97      var points = new List<double[]>();
     98
     99      points.Add(new double[] { -0.72045174, 1.44667601, -1.75159125 });
     100      points.Add(new double[] { -0.67521503, 0.61127293, -0.33962646 });
     101      points.Add(new double[] { 2.02392510, -0.41962562, -1.12211942 });
     102      points.Add(new double[] { 0.02647963, -0.24983950, -0.47038916 });
     103      points.Add(new double[] { 0.61548803, -0.25039511, 0.97745744 });
     104      points.Add(new double[] { -1.65142294, -0.09537136, 1.93154268 });
     105      points.Add(new double[] { 1.12618422, 0.49384888, 0.05286691 });
     106      points.Add(new double[] { -0.12506782, -2.29161965, -0.09710301 });
     107
     108      Stopwatch watch = new Stopwatch();
     109      //calculate convex hull
     110      watch.Start();
     111      var convexHull = LPHull.Calculate(points.ToArray());
     112      watch.Stop();
     113      Console.WriteLine("Convex hull calculation took : " + watch.Elapsed.TotalSeconds + " seconds.");
     114
     115
     116      //calculate volume of convex hull
     117      watch.Start();
     118      double volume = ConvexHullMeasures.CalculateVolume(convexHull);
     119      watch.Stop();
     120      Console.WriteLine("Volume calculation of convex hull took : " + watch.Elapsed.TotalSeconds + " seconds.");
     121      Console.WriteLine("Volume of convex hull is: " + volume);  //7.960698
     122
     123
     124      //do volume calculation from the whole data set
     125      watch.Start();
     126      volume = ConvexHullMeasures.CalculateVolume(points);
     127      watch.Stop();
     128      Console.WriteLine("Volume calculation of whole data set took : " + watch.Elapsed.TotalSeconds + " seconds.");
     129      Console.WriteLine("Volume of whole data is: " + volume);
     130
     131
     132      //do volume calculation with lrs
     133      watch = new Stopwatch();
     134      watch.Start();
     135      volume = LiblrsWrapper.CalculateVolume(points);
     136      watch.Stop();
     137      Console.WriteLine("Volume calculation of whole data set with lrs took : " + watch.Elapsed.TotalSeconds + " seconds.");
     138      Console.WriteLine("Volume of whole data with lrs is: " + volume);
     139    }
     140
     141    private static void TestSimpleVolumeCalculation() {
     142      const int numPoints = 4;
     143      const int dimension = 3;
     144
     145      double[] num1 = new double[dimension];
     146      double[] num2 = new double[dimension];
     147      double[] num3 = new double[dimension];
     148      double[] num4 = new double[dimension];
     149
     150      num1[0] = 1;
     151      num1[1] = 2;
     152      num1[2] = 2;
     153
     154      num2[0] = 3;
     155      num2[1] = 4;
     156      num2[2] = 3;
     157
     158      num3[0] = 3;
     159      num3[1] = 6;
     160      num3[2] = 3;
     161
     162      num4[0] = 7;
     163      num4[1] = 8;
     164      num4[2] = 3;
     165
     166      var points = new List<double[]>();
     167      points.Add(num1);
     168      points.Add(num2);
     169      points.Add(num3);
     170      points.Add(num4);
     171
     172
     173      double volume = ConvexHullMeasures.CalculateSimplexVolume(points);
     174
    49175    }
    50176
  • branches/HeuristicLab.Analysis.AlgorithmBehavior/qhull-2012.1/build/libqhull.vcxproj

    r10207 r10208  
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  • branches/HeuristicLab.Analysis.AlgorithmBehavior/qhull-2012.1/build/libqhull_p.vcxproj

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  • branches/HeuristicLab.Analysis.AlgorithmBehavior/qhull-2012.1/build/qconvex.vcxproj

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  • branches/HeuristicLab.Analysis.AlgorithmBehavior/qhull-2012.1/build/qdelaunay.vcxproj

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  • branches/HeuristicLab.Analysis.AlgorithmBehavior/qhull-2012.1/build/qhull.sln

    r10207 r10208  
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  • branches/HeuristicLab.Analysis.AlgorithmBehavior/qhull-2012.1/build/qhullcpp.vcxproj

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  • branches/HeuristicLab.Analysis.AlgorithmBehavior/qhull-2012.1/build/qhullstatic.vcxproj

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  • branches/HeuristicLab.Analysis.AlgorithmBehavior/qhull-2012.1/build/rbox.vcxproj

    r10207 r10208  
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  • branches/HeuristicLab.Analysis.AlgorithmBehavior/qhull-2012.1/build/testqset.vcxproj

    r10207 r10208  
    66  &nb