#region License Information /* HeuristicLab * Copyright (C) 2002-2010 Heuristic and Evolutionary Algorithms Laboratory (HEAL) * * This file is part of HeuristicLab. * * HeuristicLab is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * HeuristicLab is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with HeuristicLab. If not, see . */ #endregion using System.Linq; using HeuristicLab.Common; using HeuristicLab.Core; using HeuristicLab.Data; using HeuristicLab.Operators; using HeuristicLab.Optimization; using HeuristicLab.Parameters; using HeuristicLab.Persistence.Default.CompositeSerializers.Storable; using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding; using HeuristicLab.Problems.DataAnalysis.Regression.Symbolic; using HeuristicLab.Problems.DataAnalysis.Symbolic; using System.Collections.Generic; using HeuristicLab.Problems.DataAnalysis.Symbolic.Symbols; using HeuristicLab.Problems.DataAnalysis; using HeuristicLab.Analysis; using System; using HeuristicLab.Optimization.Operators; using HeuristicLab.Problems.DataAnalysis.Evaluators; namespace HeuristicLab.Problems.DataAnalysis.Regression.Symbolic.Analyzers { /// /// An operator that analyzes the validation best scaled symbolic regression solution. /// [Item("FixedValidationBestScaledSymbolicRegressionSolutionAnalyzer", "An operator that analyzes the validation best scaled symbolic regression solution.")] [StorableClass] public sealed class FixedValidationBestScaledSymbolicRegressionSolutionAnalyzer : SingleSuccessorOperator, ISymbolicRegressionAnalyzer { private const string SymbolicExpressionTreeParameterName = "SymbolicExpressionTree"; private const string SymbolicExpressionTreeInterpreterParameterName = "SymbolicExpressionTreeInterpreter"; private const string ProblemDataParameterName = "ProblemData"; private const string ValidationSamplesStartParameterName = "SamplesStart"; private const string ValidationSamplesEndParameterName = "SamplesEnd"; private const string QualityParameterName = "Quality"; private const string ScaledQualityParameterName = "ScaledQuality"; private const string UpperEstimationLimitParameterName = "UpperEstimationLimit"; private const string LowerEstimationLimitParameterName = "LowerEstimationLimit"; private const string AlphaParameterName = "Alpha"; private const string BetaParameterName = "Beta"; private const string BestSolutionParameterName = "Best solution (validation)"; private const string BestSolutionQualityParameterName = "Best solution quality (validation)"; private const string CurrentBestValidationQualityParameterName = "Current best validation quality"; private const string BestSolutionQualityValuesParameterName = "Validation Quality"; private const string ResultsParameterName = "Results"; private const string VariableFrequenciesParameterName = "VariableFrequencies"; private const string BestKnownQualityParameterName = "BestKnownQuality"; private const string GenerationsParameterName = "Generations"; private const string TrainingMeanSquaredErrorQualityParameterName = "Mean squared error (training)"; private const string MinTrainingMeanSquaredErrorQualityParameterName = "Min mean squared error (training)"; private const string MaxTrainingMeanSquaredErrorQualityParameterName = "Max mean squared error (training)"; private const string AverageTrainingMeanSquaredErrorQualityParameterName = "Average mean squared error (training)"; private const string BestTrainingMeanSquaredErrorQualityParameterName = "Best mean squared error (training)"; private const string TrainingAverageRelativeErrorQualityParameterName = "Average relative error (training)"; private const string MinTrainingAverageRelativeErrorQualityParameterName = "Min average relative error (training)"; private const string MaxTrainingAverageRelativeErrorQualityParameterName = "Max average relative error (training)"; private const string AverageTrainingAverageRelativeErrorQualityParameterName = "Average average relative error (training)"; private const string BestTrainingAverageRelativeErrorQualityParameterName = "Best average relative error (training)"; private const string TrainingRSquaredQualityParameterName = "Rē (training)"; private const string MinTrainingRSquaredQualityParameterName = "Min Rē (training)"; private const string MaxTrainingRSquaredQualityParameterName = "Max Rē (training)"; private const string AverageTrainingRSquaredQualityParameterName = "Average Rē (training)"; private const string BestTrainingRSquaredQualityParameterName = "Best Rē (training)"; private const string TestMeanSquaredErrorQualityParameterName = "Mean squared error (test)"; private const string MinTestMeanSquaredErrorQualityParameterName = "Min mean squared error (test)"; private const string MaxTestMeanSquaredErrorQualityParameterName = "Max mean squared error (test)"; private const string AverageTestMeanSquaredErrorQualityParameterName = "Average mean squared error (test)"; private const string BestTestMeanSquaredErrorQualityParameterName = "Best mean squared error (test)"; private const string TestAverageRelativeErrorQualityParameterName = "Average relative error (test)"; private const string MinTestAverageRelativeErrorQualityParameterName = "Min average relative error (test)"; private const string MaxTestAverageRelativeErrorQualityParameterName = "Max average relative error (test)"; private const string AverageTestAverageRelativeErrorQualityParameterName = "Average average relative error (test)"; private const string BestTestAverageRelativeErrorQualityParameterName = "Best average relative error (test)"; private const string TestRSquaredQualityParameterName = "Rē (test)"; private const string MinTestRSquaredQualityParameterName = "Min Rē (test)"; private const string MaxTestRSquaredQualityParameterName = "Max Rē (test)"; private const string AverageTestRSquaredQualityParameterName = "Average Rē (test)"; private const string BestTestRSquaredQualityParameterName = "Best Rē (test)"; private const string RSquaredValuesParameterName = "Rē"; private const string MeanSquaredErrorValuesParameterName = "Mean squared error"; private const string RelativeErrorValuesParameterName = "Average relative error"; #region parameter properties public ScopeTreeLookupParameter SymbolicExpressionTreeParameter { get { return (ScopeTreeLookupParameter)Parameters[SymbolicExpressionTreeParameterName]; } } public ScopeTreeLookupParameter QualityParameter { get { return (ScopeTreeLookupParameter)Parameters[QualityParameterName]; } } public ScopeTreeLookupParameter AlphaParameter { get { return (ScopeTreeLookupParameter)Parameters[AlphaParameterName]; } } public ScopeTreeLookupParameter BetaParameter { get { return (ScopeTreeLookupParameter)Parameters[BetaParameterName]; } } public IValueLookupParameter SymbolicExpressionTreeInterpreterParameter { get { return (IValueLookupParameter)Parameters[SymbolicExpressionTreeInterpreterParameterName]; } } public IValueLookupParameter ProblemDataParameter { get { return (IValueLookupParameter)Parameters[ProblemDataParameterName]; } } public IValueLookupParameter ValidationSamplesStartParameter { get { return (IValueLookupParameter)Parameters[ValidationSamplesStartParameterName]; } } public IValueLookupParameter ValidationSamplesEndParameter { get { return (IValueLookupParameter)Parameters[ValidationSamplesEndParameterName]; } } public IValueLookupParameter UpperEstimationLimitParameter { get { return (IValueLookupParameter)Parameters[UpperEstimationLimitParameterName]; } } public IValueLookupParameter LowerEstimationLimitParameter { get { return (IValueLookupParameter)Parameters[LowerEstimationLimitParameterName]; } } public ILookupParameter BestSolutionParameter { get { return (ILookupParameter)Parameters[BestSolutionParameterName]; } } public ILookupParameter GenerationsParameter { get { return (ILookupParameter)Parameters[GenerationsParameterName]; } } public ILookupParameter BestSolutionQualityParameter { get { return (ILookupParameter)Parameters[BestSolutionQualityParameterName]; } } public ILookupParameter ResultsParameter { get { return (ILookupParameter)Parameters[ResultsParameterName]; } } public ILookupParameter BestKnownQualityParameter { get { return (ILookupParameter)Parameters[BestKnownQualityParameterName]; } } public ILookupParameter VariableFrequenciesParameter { get { return (ILookupParameter)Parameters[VariableFrequenciesParameterName]; } } #endregion #region properties public ItemArray SymbolicExpressionTree { get { return SymbolicExpressionTreeParameter.ActualValue; } } public ItemArray Quality { get { return QualityParameter.ActualValue; } } public ItemArray Alpha { get { return AlphaParameter.ActualValue; } } public ItemArray Beta { get { return BetaParameter.ActualValue; } } public ISymbolicExpressionTreeInterpreter SymbolicExpressionTreeInterpreter { get { return SymbolicExpressionTreeInterpreterParameter.ActualValue; } } public DataAnalysisProblemData ProblemData { get { return ProblemDataParameter.ActualValue; } } public IntValue ValidiationSamplesStart { get { return ValidationSamplesStartParameter.ActualValue; } } public IntValue ValidationSamplesEnd { get { return ValidationSamplesEndParameter.ActualValue; } } public DoubleValue UpperEstimationLimit { get { return UpperEstimationLimitParameter.ActualValue; } } public DoubleValue LowerEstimationLimit { get { return LowerEstimationLimitParameter.ActualValue; } } public ResultCollection Results { get { return ResultsParameter.ActualValue; } } public DataTable VariableFrequencies { get { return VariableFrequenciesParameter.ActualValue; } } public IntValue Generations { get { return GenerationsParameter.ActualValue; } } #endregion public FixedValidationBestScaledSymbolicRegressionSolutionAnalyzer() : base() { Parameters.Add(new ScopeTreeLookupParameter(SymbolicExpressionTreeParameterName, "The symbolic expression trees to analyze.")); Parameters.Add(new ScopeTreeLookupParameter(QualityParameterName, "The quality of the symbolic expression trees to analyze.")); Parameters.Add(new ScopeTreeLookupParameter(AlphaParameterName, "The alpha parameter for linear scaling.")); Parameters.Add(new ScopeTreeLookupParameter(BetaParameterName, "The beta parameter for linear scaling.")); Parameters.Add(new ValueLookupParameter(SymbolicExpressionTreeInterpreterParameterName, "The interpreter that should be used for the analysis of symbolic expression trees.")); Parameters.Add(new ValueLookupParameter(ProblemDataParameterName, "The problem data for which the symbolic expression tree is a solution.")); Parameters.Add(new ValueLookupParameter(ValidationSamplesStartParameterName, "The first index of the validation partition of the data set.")); Parameters.Add(new ValueLookupParameter(ValidationSamplesEndParameterName, "The last index of the validation partition of the data set.")); Parameters.Add(new ValueLookupParameter(UpperEstimationLimitParameterName, "The upper estimation limit that was set for the evaluation of the symbolic expression trees.")); Parameters.Add(new ValueLookupParameter(LowerEstimationLimitParameterName, "The lower estimation limit that was set for the evaluation of the symbolic expression trees.")); Parameters.Add(new LookupParameter(BestSolutionParameterName, "The best symbolic regression solution.")); Parameters.Add(new LookupParameter(GenerationsParameterName, "The number of generations calculated so far.")); Parameters.Add(new LookupParameter(BestSolutionQualityParameterName, "The quality of the best symbolic regression solution.")); Parameters.Add(new LookupParameter(ResultsParameterName, "The result collection where the best symbolic regression solution should be stored.")); Parameters.Add(new LookupParameter(BestKnownQualityParameterName, "The best known (validation) quality achieved on the data set.")); Parameters.Add(new LookupParameter(VariableFrequenciesParameterName, "The variable frequencies table to use for the calculation of variable impacts")); } [StorableConstructor] private FixedValidationBestScaledSymbolicRegressionSolutionAnalyzer(bool deserializing) : base() { } public override IOperation Apply() { var alphas = Alpha; var betas = Beta; var trees = SymbolicExpressionTree; IEnumerable scaledTrees; if (alphas.Length == trees.Length) { scaledTrees = from i in Enumerable.Range(0, trees.Length) select SymbolicRegressionSolutionLinearScaler.Scale(trees[i], alphas[i].Value, betas[i].Value); } else { scaledTrees = trees; } int trainingStart = ProblemData.TrainingSamplesStart.Value; int trainingEnd = ProblemData.TrainingSamplesEnd.Value; int testStart = ProblemData.TestSamplesStart.Value; int testEnd = ProblemData.TestSamplesEnd.Value; SymbolicRegressionModelQualityAnalyzer.Analyze(scaledTrees, SymbolicExpressionTreeInterpreter, UpperEstimationLimit.Value, LowerEstimationLimit.Value, ProblemData, trainingStart, trainingEnd, testStart, testEnd, Results); #region validation best model int targetVariableIndex = ProblemData.Dataset.GetVariableIndex(ProblemData.TargetVariable.Value); int validationStart = ValidiationSamplesStart.Value; int validationEnd = ValidationSamplesEnd.Value; double upperEstimationLimit = UpperEstimationLimit != null ? UpperEstimationLimit.Value : double.PositiveInfinity; double lowerEstimationLimit = LowerEstimationLimit != null ? LowerEstimationLimit.Value : double.NegativeInfinity; double bestValidationMse = double.MaxValue; SymbolicExpressionTree bestTree = null; OnlineMeanSquaredErrorEvaluator mseEvaluator = new OnlineMeanSquaredErrorEvaluator(); foreach (var scaledTree in scaledTrees) { mseEvaluator.Reset(); IEnumerable estimatedValidationValues = SymbolicExpressionTreeInterpreter.GetSymbolicExpressionTreeValues(scaledTree, ProblemData.Dataset, Enumerable.Range(validationStart, validationEnd - validationStart)); IEnumerable originalValidationValues = ProblemData.Dataset.GetEnumeratedVariableValues(targetVariableIndex, validationStart, validationEnd); var estimatedEnumerator = estimatedValidationValues.GetEnumerator(); var originalEnumerator = originalValidationValues.GetEnumerator(); while (estimatedEnumerator.MoveNext() & originalEnumerator.MoveNext()) { double estimated = estimatedEnumerator.Current; if (double.IsNaN(estimated)) estimated = upperEstimationLimit; else estimated = Math.Min(upperEstimationLimit, Math.Max(lowerEstimationLimit, estimated)); mseEvaluator.Add(originalEnumerator.Current, estimated); } double validationMse = mseEvaluator.MeanSquaredError; if (validationMse < bestValidationMse) { bestValidationMse = validationMse; bestTree = scaledTree; } } if (BestSolutionQualityParameter.ActualValue == null || BestSolutionQualityParameter.ActualValue.Value > bestValidationMse) { var model = new SymbolicRegressionModel((ISymbolicExpressionTreeInterpreter)SymbolicExpressionTreeInterpreter.Clone(), bestTree); var solution = new SymbolicRegressionSolution(ProblemData, model, lowerEstimationLimit, upperEstimationLimit); solution.Name = BestSolutionParameterName; solution.Description = "Best solution on validation partition found over the whole run."; BestSolutionParameter.ActualValue = solution; BestSolutionQualityParameter.ActualValue = new DoubleValue(bestValidationMse); BestSymbolicRegressionSolutionAnalyzer.UpdateBestSolutionResults(solution, ProblemData, Results, Generations, VariableFrequencies); } if (!Results.ContainsKey(BestSolutionQualityValuesParameterName)) { Results.Add(new Result(BestSolutionQualityValuesParameterName, new DataTable(BestSolutionQualityValuesParameterName, BestSolutionQualityValuesParameterName))); Results.Add(new Result(BestSolutionQualityParameterName, new DoubleValue())); Results.Add(new Result(CurrentBestValidationQualityParameterName, new DoubleValue())); } Results[BestSolutionQualityParameterName].Value = new DoubleValue(BestSolutionQualityParameter.ActualValue.Value); Results[CurrentBestValidationQualityParameterName].Value = new DoubleValue(bestValidationMse); DataTable validationValues = (DataTable)Results[BestSolutionQualityValuesParameterName].Value; AddValue(validationValues, BestSolutionQualityParameter.ActualValue.Value, BestSolutionQualityParameterName, BestSolutionQualityParameterName); AddValue(validationValues, bestValidationMse, CurrentBestValidationQualityParameterName, CurrentBestValidationQualityParameterName); #endregion return base.Apply(); } [StorableHook(HookType.AfterDeserialization)] private void Initialize() { if (!Parameters.ContainsKey(AlphaParameterName)) { Parameters.Add(new ScopeTreeLookupParameter(AlphaParameterName, "The alpha parameter for linear scaling.")); } if (!Parameters.ContainsKey(BetaParameterName)) { Parameters.Add(new ScopeTreeLookupParameter(BetaParameterName, "The beta parameter for linear scaling.")); } if (!Parameters.ContainsKey(VariableFrequenciesParameterName)) { Parameters.Add(new LookupParameter(VariableFrequenciesParameterName, "The variable frequencies table to use for the calculation of variable impacts")); } if (!Parameters.ContainsKey(GenerationsParameterName)) { Parameters.Add(new LookupParameter(GenerationsParameterName, "The number of generations calculated so far.")); } } private static void AddValue(DataTable table, double data, string name, string description) { DataRow row; table.Rows.TryGetValue(name, out row); if (row == null) { row = new DataRow(name, description); row.Values.Add(data); table.Rows.Add(row); } else { row.Values.Add(data); } } } }