#region License Information
/* HeuristicLab
* Copyright (C) 2002-2012 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
*
* This file is part of HeuristicLab.
*
* HeuristicLab is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* HeuristicLab is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with HeuristicLab. If not, see .
*/
#endregion
using System;
using System.Linq;
using HeuristicLab.Common;
using HeuristicLab.Core;
using HeuristicLab.Data;
using HeuristicLab.Operators;
using HeuristicLab.Optimization;
using HeuristicLab.Parameters;
using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
namespace HeuristicLab.Analysis {
///
/// An operator for analyzing the solution diversity in a population.
///
[Item("PopulationDiversityAnalyzer", "An operator for analyzing the solution diversity in a population.")]
[StorableClass]
public abstract class PopulationDiversityAnalyzer : SingleSuccessorOperator, IAnalyzer where T : class, IItem {
public virtual bool EnabledByDefault {
get { return false; }
}
public LookupParameter MaximizationParameter {
get { return (LookupParameter)Parameters["Maximization"]; }
}
public ScopeTreeLookupParameter SolutionParameter {
get { return (ScopeTreeLookupParameter)Parameters["Solution"]; }
}
public ScopeTreeLookupParameter QualityParameter {
get { return (ScopeTreeLookupParameter)Parameters["Quality"]; }
}
public ValueLookupParameter ResultsParameter {
get { return (ValueLookupParameter)Parameters["Results"]; }
}
public ValueParameter StoreHistoryParameter {
get { return (ValueParameter)Parameters["StoreHistory"]; }
}
public ValueParameter UpdateIntervalParameter {
get { return (ValueParameter)Parameters["UpdateInterval"]; }
}
public LookupParameter UpdateCounterParameter {
get { return (LookupParameter)Parameters["UpdateCounter"]; }
}
[StorableConstructor]
protected PopulationDiversityAnalyzer(bool deserializing) : base(deserializing) { }
protected PopulationDiversityAnalyzer(PopulationDiversityAnalyzer original, Cloner cloner) : base(original, cloner) { }
public PopulationDiversityAnalyzer()
: base() {
Parameters.Add(new LookupParameter("Maximization", "True if the problem is a maximization problem."));
Parameters.Add(new ScopeTreeLookupParameter("Solution", "The solutions whose diversity should be analyzed."));
Parameters.Add(new ScopeTreeLookupParameter("Quality", "The qualities of the solutions which should be analyzed."));
Parameters.Add(new ValueLookupParameter("Results", "The result collection where the population diversity analysis results should be stored."));
Parameters.Add(new ValueParameter("StoreHistory", "True if the history of the population diversity analysis should be stored.", new BoolValue(false)));
Parameters.Add(new ValueParameter("UpdateInterval", "The interval in which the population diversity analysis should be applied.", new IntValue(1)));
Parameters.Add(new LookupParameter("UpdateCounter", "The value which counts how many times the operator was called since the last update.", "PopulationDiversityAnalyzerUpdateCounter"));
MaximizationParameter.Hidden = true;
SolutionParameter.Hidden = true;
QualityParameter.Hidden = true;
ResultsParameter.Hidden = true;
UpdateCounterParameter.Hidden = true;
}
public override IOperation Apply() {
int updateInterval = UpdateIntervalParameter.Value.Value;
IntValue updateCounter = UpdateCounterParameter.ActualValue;
// if counter does not yet exist then initialize it with update interval
// to make sure the solutions are analyzed on the first application of this operator
if (updateCounter == null) {
updateCounter = new IntValue(updateInterval);
UpdateCounterParameter.ActualValue = updateCounter;
} else updateCounter.Value++;
//analyze solutions only every 'updateInterval' times
if (updateCounter.Value == updateInterval) {
updateCounter.Value = 0;
bool max = MaximizationParameter.ActualValue.Value;
ItemArray solutions = SolutionParameter.ActualValue;
ItemArray qualities = QualityParameter.ActualValue;
bool storeHistory = StoreHistoryParameter.Value.Value;
int count = solutions.Length;
if (count > 1) {
// sort solutions by quality
T[] sortedSolutions = null;
if (max)
sortedSolutions = solutions
.Select((x, index) => new { Solution = x, Quality = qualities[index] })
.OrderByDescending(x => x.Quality)
.Select(x => x.Solution)
.ToArray();
else
sortedSolutions = solutions
.Select((x, index) => new { Solution = x, Quality = qualities[index] })
.OrderBy(x => x.Quality)
.Select(x => x.Solution)
.ToArray();
// calculate solution similarities
double[,] similarities = CalculateSimilarities(sortedSolutions);
// calculate minimum, average and maximum similarities
double similarity;
double[] minSimilarities = new double[count];
double[] avgSimilarities = new double[count];
double[] maxSimilarities = new double[count];
for (int i = 0; i < count; i++) {
minSimilarities[i] = 1;
avgSimilarities[i] = 0;
maxSimilarities[i] = 0;
for (int j = 0; j < count; j++) {
if (i != j) {
similarity = similarities[i, j];
if ((similarity < 0) || (similarity > 1))
throw new InvalidOperationException("Solution similarities have to be in the interval [0;1].");
if (minSimilarities[i] > similarity) minSimilarities[i] = similarity;
avgSimilarities[i] += similarity;
if (maxSimilarities[i] < similarity) maxSimilarities[i] = similarity;
}
}
avgSimilarities[i] = avgSimilarities[i] / (count - 1);
}
double avgMinSimilarity = minSimilarities.Average();
double avgAvgSimilarity = avgSimilarities.Average();
double avgMaxSimilarity = maxSimilarities.Average();
// fetch results collection
ResultCollection results;
if (!ResultsParameter.ActualValue.ContainsKey(Name + " Results")) {
results = new ResultCollection();
ResultsParameter.ActualValue.Add(new Result(Name + " Results", results));
} else {
results = (ResultCollection)ResultsParameter.ActualValue[Name + " Results"].Value;
}
// store similarities
HeatMap similaritiesHeatMap = new HeatMap(similarities, "Solution Similarities", 0.0, 1.0);
if (!results.ContainsKey("Solution Similarities"))
results.Add(new Result("Solution Similarities", similaritiesHeatMap));
else
results["Solution Similarities"].Value = similaritiesHeatMap;
// store similarities history
if (storeHistory) {
if (!results.ContainsKey("Solution Similarities History")) {
HeatMapHistory history = new HeatMapHistory();
history.Add(similaritiesHeatMap);
results.Add(new Result("Solution Similarities History", history));
} else {
((HeatMapHistory)results["Solution Similarities History"].Value).Add(similaritiesHeatMap);
}
}
// store average minimum, average and maximum similarity
if (!results.ContainsKey("Average Minimum Solution Similarity"))
results.Add(new Result("Average Minimum Solution Similarity", new DoubleValue(avgMinSimilarity)));
else
((DoubleValue)results["Average Minimum Solution Similarity"].Value).Value = avgMinSimilarity;
if (!results.ContainsKey("Average Average Solution Similarity"))
results.Add(new Result("Average Average Solution Similarity", new DoubleValue(avgAvgSimilarity)));
else
((DoubleValue)results["Average Average Solution Similarity"].Value).Value = avgAvgSimilarity;
if (!results.ContainsKey("Average Maximum Solution Similarity"))
results.Add(new Result("Average Maximum Solution Similarity", new DoubleValue(avgMaxSimilarity)));
else
((DoubleValue)results["Average Maximum Solution Similarity"].Value).Value = avgMaxSimilarity;
// store average minimum, average and maximum solution similarity data table
DataTable minAvgMaxSimilarityDataTable;
if (!results.ContainsKey("Average Minimum/Average/Maximum Solution Similarity")) {
minAvgMaxSimilarityDataTable = new DataTable("Average Minimum/Average/Maximum Solution Similarity");
minAvgMaxSimilarityDataTable.VisualProperties.XAxisTitle = "Iteration";
minAvgMaxSimilarityDataTable.VisualProperties.YAxisTitle = "Solution Similarity";
minAvgMaxSimilarityDataTable.Rows.Add(new DataRow("Average Minimum Solution Similarity", null));
minAvgMaxSimilarityDataTable.Rows["Average Minimum Solution Similarity"].VisualProperties.StartIndexZero = true;
minAvgMaxSimilarityDataTable.Rows.Add(new DataRow("Average Average Solution Similarity", null));
minAvgMaxSimilarityDataTable.Rows["Average Average Solution Similarity"].VisualProperties.StartIndexZero = true;
minAvgMaxSimilarityDataTable.Rows.Add(new DataRow("Average Maximum Solution Similarity", null));
minAvgMaxSimilarityDataTable.Rows["Average Maximum Solution Similarity"].VisualProperties.StartIndexZero = true;
results.Add(new Result("Average Minimum/Average/Maximum Solution Similarity", minAvgMaxSimilarityDataTable));
} else {
minAvgMaxSimilarityDataTable = (DataTable)results["Average Minimum/Average/Maximum Solution Similarity"].Value;
}
minAvgMaxSimilarityDataTable.Rows["Average Minimum Solution Similarity"].Values.Add(avgMinSimilarity);
minAvgMaxSimilarityDataTable.Rows["Average Average Solution Similarity"].Values.Add(avgAvgSimilarity);
minAvgMaxSimilarityDataTable.Rows["Average Maximum Solution Similarity"].Values.Add(avgMaxSimilarity);
// store minimum, average, maximum similarities data table
DataTable minAvgMaxSimilaritiesDataTable = new DataTable("Minimum/Average/Maximum Solution Similarities");
minAvgMaxSimilaritiesDataTable.VisualProperties.XAxisTitle = "Solution Index";
minAvgMaxSimilaritiesDataTable.VisualProperties.YAxisTitle = "Solution Similarity";
minAvgMaxSimilaritiesDataTable.Rows.Add(new DataRow("Minimum Solution Similarity", null, minSimilarities));
minAvgMaxSimilaritiesDataTable.Rows["Minimum Solution Similarity"].VisualProperties.ChartType = DataRowVisualProperties.DataRowChartType.Points;
minAvgMaxSimilaritiesDataTable.Rows.Add(new DataRow("Average Solution Similarity", null, avgSimilarities));
minAvgMaxSimilaritiesDataTable.Rows["Average Solution Similarity"].VisualProperties.ChartType = DataRowVisualProperties.DataRowChartType.Points;
minAvgMaxSimilaritiesDataTable.Rows.Add(new DataRow("Maximum Solution Similarity", null, maxSimilarities));
minAvgMaxSimilaritiesDataTable.Rows["Maximum Solution Similarity"].VisualProperties.ChartType = DataRowVisualProperties.DataRowChartType.Points;
if (!results.ContainsKey("Minimum/Average/Maximum Solution Similarities")) {
results.Add(new Result("Minimum/Average/Maximum Solution Similarities", minAvgMaxSimilaritiesDataTable));
} else {
results["Minimum/Average/Maximum Solution Similarities"].Value = minAvgMaxSimilaritiesDataTable;
}
// store minimum, average, maximum similarities history
if (storeHistory) {
if (!results.ContainsKey("Minimum/Average/Maximum Solution Similarities History")) {
DataTableHistory history = new DataTableHistory();
history.Add(minAvgMaxSimilaritiesDataTable);
results.Add(new Result("Minimum/Average/Maximum Solution Similarities History", history));
} else {
((DataTableHistory)results["Minimum/Average/Maximum Solution Similarities History"].Value).Add(minAvgMaxSimilaritiesDataTable);
}
}
}
}
return base.Apply();
}
protected abstract double[,] CalculateSimilarities(T[] solutions);
}
}