#region License Information /* HeuristicLab * Copyright (C) 2002-2011 Heuristic and Evolutionary Algorithms Laboratory (HEAL) * * This file is part of HeuristicLab. * * HeuristicLab is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * HeuristicLab is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with HeuristicLab. If not, see . */ #endregion using System; using System.Collections.Generic; using System.IO; using System.Linq; using System.Text; using HeuristicLab.Common; using HeuristicLab.Core; using HeuristicLab.Persistence.Default.CompositeSerializers.Storable; using HeuristicLab.Problems.DataAnalysis; using SVM; namespace HeuristicLab.Algorithms.DataAnalysis { /// /// Represents a random forest model for regression and classification /// [StorableClass] [Item("RandomForestModel", "Represents a random forest for regression and classification.")] public sealed class RandomForestModel : NamedItem, IRandomForestModel { private alglib.decisionforest randomForest; public alglib.decisionforest RandomForest { get { return randomForest; } set { if (value != randomForest) { if (value == null) throw new ArgumentNullException(); randomForest = value; OnChanged(EventArgs.Empty); } } } [Storable] private string targetVariable; [Storable] private string[] allowedInputVariables; [Storable] private double[] classValues; [StorableConstructor] private RandomForestModel(bool deserializing) : base(deserializing) { if (deserializing) randomForest = new alglib.decisionforest(); } private RandomForestModel(RandomForestModel original, Cloner cloner) : base(original, cloner) { randomForest = new alglib.decisionforest(); randomForest.innerobj.bufsize = original.randomForest.innerobj.bufsize; randomForest.innerobj.nclasses = original.randomForest.innerobj.nclasses; randomForest.innerobj.ntrees = original.randomForest.innerobj.ntrees; randomForest.innerobj.nvars = original.randomForest.innerobj.nvars; randomForest.innerobj.trees = (double[])original.randomForest.innerobj.trees.Clone(); targetVariable = original.targetVariable; allowedInputVariables = (string[])original.allowedInputVariables.Clone(); if (original.classValues != null) this.classValues = (double[])original.classValues.Clone(); } public RandomForestModel(alglib.decisionforest randomForest, string targetVariable, IEnumerable allowedInputVariables, double[] classValues = null) : base() { this.name = ItemName; this.description = ItemDescription; this.randomForest = randomForest; this.targetVariable = targetVariable; this.allowedInputVariables = allowedInputVariables.ToArray(); if (classValues != null) this.classValues = (double[])classValues.Clone(); } public override IDeepCloneable Clone(Cloner cloner) { return new RandomForestModel(this, cloner); } public IEnumerable GetEstimatedValues(Dataset dataset, IEnumerable rows) { double[,] inputData = AlglibUtil.PrepareInputMatrix(dataset, allowedInputVariables, rows); int n = inputData.GetLength(0); int columns = inputData.GetLength(1); double[] x = new double[columns]; double[] y = new double[1]; for (int row = 0; row < n; row++) { for (int column = 0; column < columns; column++) { x[column] = inputData[row, column]; } alglib.dfprocess(randomForest, x, ref y); yield return y[0]; } } public IEnumerable GetEstimatedClassValues(Dataset dataset, IEnumerable rows) { double[,] inputData = AlglibUtil.PrepareInputMatrix(dataset, allowedInputVariables, rows); int n = inputData.GetLength(0); int columns = inputData.GetLength(1); double[] x = new double[columns]; double[] y = new double[randomForest.innerobj.nclasses]; for (int row = 0; row < n; row++) { for (int column = 0; column < columns; column++) { x[column] = inputData[row, column]; } alglib.dfprocess(randomForest, x, ref y); // find class for with the largest probability value int maxProbClassIndex = 0; double maxProb = y[0]; for (int i = 1; i < y.Length; i++) { if (maxProb < y[i]) { maxProb = y[i]; maxProbClassIndex = i; } } yield return classValues[maxProbClassIndex]; } } #region events public event EventHandler Changed; private void OnChanged(EventArgs e) { var handlers = Changed; if (handlers != null) handlers(this, e); } #endregion #region persistence [Storable] private int RandomForestBufSize { get { return randomForest.innerobj.bufsize; } set { randomForest.innerobj.bufsize = value; } } [Storable] private int RandomForestNClasses { get { return randomForest.innerobj.nclasses; } set { randomForest.innerobj.nclasses = value; } } [Storable] private int RandomForestNTrees { get { return randomForest.innerobj.ntrees; } set { randomForest.innerobj.ntrees = value; } } [Storable] private int RandomForestNVars { get { return randomForest.innerobj.nvars; } set { randomForest.innerobj.nvars = value; } } [Storable] private double[] RandomForestTrees { get { return randomForest.innerobj.trees; } set { randomForest.innerobj.trees = value; } } #endregion } }