#region License Information
/* HeuristicLab
* Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
*
* This file is part of HeuristicLab.
*
* HeuristicLab is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* HeuristicLab is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with HeuristicLab. If not, see .
*/
#endregion
using System.Collections.Generic;
using System.Linq;
using HeuristicLab.Common;
using HeuristicLab.Core;
using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
namespace HeuristicLab.Problems.DataAnalysis.Symbolic.Regression {
[StorableClass]
[Item("SymbolicRegressionPruningOperator", "An operator which prunes symbolic regression trees.")]
public class SymbolicRegressionPruningOperator : SymbolicDataAnalysisExpressionPruningOperator {
protected SymbolicRegressionPruningOperator(SymbolicRegressionPruningOperator original, Cloner cloner)
: base(original, cloner) {
}
public override IDeepCloneable Clone(Cloner cloner) {
return new SymbolicRegressionPruningOperator(this, cloner);
}
[StorableConstructor]
protected SymbolicRegressionPruningOperator(bool deserializing) : base(deserializing) { }
public SymbolicRegressionPruningOperator(ISymbolicDataAnalysisSolutionImpactValuesCalculator impactValuesCalculator)
: base(impactValuesCalculator) {
}
protected override ISymbolicDataAnalysisModel CreateModel(ISymbolicExpressionTree tree, ISymbolicDataAnalysisExpressionTreeInterpreter interpreter, IDataAnalysisProblemData problemData, DoubleLimit estimationLimits) {
return new SymbolicRegressionModel(tree, interpreter, estimationLimits.Lower, estimationLimits.Upper);
}
protected override double Evaluate(IDataAnalysisModel model) {
var regressionModel = (IRegressionModel)model;
var regressionProblemData = (IRegressionProblemData)ProblemData;
var rows = Enumerable.Range(FitnessCalculationPartition.Start, FitnessCalculationPartition.Size);
return Evaluate(regressionModel, regressionProblemData, rows);
}
private static double Evaluate(IRegressionModel model, IRegressionProblemData problemData,
IEnumerable rows) {
var estimatedValues = model.GetEstimatedValues(problemData.Dataset, rows); // also bounds the values
var targetValues = problemData.Dataset.GetDoubleValues(problemData.TargetVariable, rows);
OnlineCalculatorError errorState;
var quality = OnlinePearsonsRSquaredCalculator.Calculate(targetValues, estimatedValues, out errorState);
if (errorState != OnlineCalculatorError.None) return double.NaN;
return quality;
}
public static ISymbolicExpressionTree Prune(ISymbolicExpressionTree tree, SymbolicRegressionSolutionImpactValuesCalculator impactValuesCalculator, ISymbolicDataAnalysisExpressionTreeInterpreter interpreter, IRegressionProblemData problemData, DoubleLimit estimationLimits, IEnumerable rows, double nodeImpactThreshold = 0.0, bool pruneOnlyZeroImpactNodes = false) {
var clonedTree = (ISymbolicExpressionTree)tree.Clone();
var model = new SymbolicRegressionModel(clonedTree, interpreter, estimationLimits.Lower, estimationLimits.Upper);
var nodes = clonedTree.IterateNodesPrefix().ToList();
double quality = Evaluate(model, problemData, rows);
for (int i = 0; i < nodes.Count; ++i) {
var node = nodes[i];
if (node is ConstantTreeNode) continue;
double impactValue, replacementValue;
impactValuesCalculator.CalculateImpactAndReplacementValues(model, node, problemData, rows, out impactValue, out replacementValue, quality);
if (pruneOnlyZeroImpactNodes) {
if (!impactValue.IsAlmost(0.0)) continue;
} else if (nodeImpactThreshold < impactValue) {
continue;
}
var constantNode = (ConstantTreeNode)node.Grammar.GetSymbol("Constant").CreateTreeNode();
constantNode.Value = replacementValue;
ReplaceWithConstant(node, constantNode);
i += node.GetLength() - 1; // skip subtrees under the node that was folded
quality -= impactValue;
}
return model.SymbolicExpressionTree;
}
}
}