#region License Information
/* HeuristicLab
* Copyright (C) 2002-2010 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
*
* This file is part of HeuristicLab.
*
* HeuristicLab is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* HeuristicLab is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with HeuristicLab. If not, see .
*/
#endregion
using System;
using System.Collections.Generic;
using System.Globalization;
using System.IO;
using System.Linq;
using System.Text;
namespace HeuristicLab.Problems.DataAnalysis {
public class CsvFileParser {
private const string VARIABLENAMES = "VARIABLENAMES";
private Tokenizer tokenizer;
private List variableNames;
private List> rowValues;
private int rows;
public int Rows {
get { return rows; }
set { rows = value; }
}
private int columns;
public int Columns {
get { return columns; }
set { columns = value; }
}
private double[,] values;
public double[,] Values {
get {
return values;
}
}
public IEnumerable VariableNames {
get {
if (variableNames.Count > 0) return variableNames;
else {
string[] names = new string[columns];
for (int i = 0; i < names.Length; i++) {
names[i] = "X" + i.ToString("000");
}
return names;
}
}
}
public CsvFileParser() {
rowValues = new List>();
variableNames = new List();
}
private void Reset() {
variableNames.Clear();
rowValues.Clear();
}
public void Parse(string fileName) {
TryParse(fileName);
// translate the list of samples into a DoubleMatrixData item
rows = rowValues.Count;
columns = rowValues[0].Count;
values = new double[rows, columns];
int rowIndex = 0;
int columnIndex = 0;
foreach (List row in rowValues) {
columnIndex = 0;
foreach (double element in row) {
values[rowIndex, columnIndex++] = element;
}
rowIndex++;
}
}
private void TryParse(string fileName) {
Exception lastEx = null;
NumberFormatInfo[] possibleFormats = new NumberFormatInfo[] { CultureInfo.InvariantCulture.NumberFormat };
foreach (NumberFormatInfo numberFormat in possibleFormats) {
using (StreamReader reader = new StreamReader(fileName)) {
tokenizer = new Tokenizer(reader, numberFormat);
try {
// parse the file
Parse();
return; // parsed without errors -> return;
}
catch (DataFormatException ex) {
lastEx = ex;
}
}
}
// all number formats threw an exception -> rethrow the last exception
throw lastEx;
}
#region tokenizer
internal enum TokenTypeEnum {
NewLine, Separator, String, Double
}
internal class Token {
public TokenTypeEnum type;
public string stringValue;
public double doubleValue;
public Token(TokenTypeEnum type, string value) {
this.type = type;
stringValue = value;
doubleValue = 0.0;
}
public override string ToString() {
return stringValue;
}
}
internal class Tokenizer {
private StreamReader reader;
private List tokens;
private NumberFormatInfo numberFormatInfo;
private int currentLineNumber = 0;
public int CurrentLineNumber {
get { return currentLineNumber; }
private set { currentLineNumber = value; }
}
private string currentLine;
public string CurrentLine {
get { return currentLine; }
private set { currentLine = value; }
}
private Token newlineToken;
public Token NewlineToken {
get { return newlineToken; }
private set { newlineToken = value; }
}
private Token separatorToken;
public Token SeparatorToken {
get { return separatorToken; }
private set { separatorToken = value; }
}
public Tokenizer(StreamReader reader, NumberFormatInfo numberFormatInfo, char separator) {
this.reader = reader;
this.numberFormatInfo = numberFormatInfo;
separatorToken = new Token(TokenTypeEnum.Separator, separator.ToString());
newlineToken = new Token(TokenTypeEnum.NewLine, Environment.NewLine);
tokens = new List();
ReadNextTokens();
}
public Tokenizer(StreamReader reader, NumberFormatInfo numberFormatInfo)
: this(reader, numberFormatInfo, ';') {
}
private void ReadNextTokens() {
if (!reader.EndOfStream) {
CurrentLine = reader.ReadLine();
var newTokens = from str in Split(CurrentLine)
let trimmedStr = str.Trim()
where !string.IsNullOrEmpty(trimmedStr)
select MakeToken(trimmedStr.Trim());
tokens.AddRange(newTokens);
tokens.Add(NewlineToken);
CurrentLineNumber++;
}
}
private IEnumerable Split(string line) {
StringBuilder subStr = new StringBuilder();
foreach (char c in line) {
if (c == ';') {
yield return subStr.ToString();
subStr = new StringBuilder();
yield return c.ToString();
} else {
subStr.Append(c);
}
}
yield return subStr.ToString();
}
private Token MakeToken(string strToken) {
Token token = new Token(TokenTypeEnum.String, strToken);
if (strToken.Equals(SeparatorToken.stringValue)) {
return SeparatorToken;
} else if (double.TryParse(strToken, NumberStyles.Float, numberFormatInfo, out token.doubleValue)) {
token.type = TokenTypeEnum.Double;
return token;
}
// couldn't parse the token as an int or float number so return a string token
return token;
}
public Token Peek() {
return tokens[0];
}
public Token Next() {
Token next = tokens[0];
tokens.RemoveAt(0);
if (tokens.Count == 0) {
ReadNextTokens();
}
return next;
}
public bool HasNext() {
return tokens.Count > 0 || !reader.EndOfStream;
}
}
#endregion
#region parsing
private void Parse() {
ParseVariableNames();
if (!tokenizer.HasNext()) Error("Couldn't parse data values. Probably because of incorrect number format (the parser expects english number format with a '.' as decimal separator).", "", tokenizer.CurrentLineNumber);
ParseValues();
if (rowValues.Count == 0) Error("Couldn't parse data values. Probably because of incorrect number format (the parser expects english number format with a '.' as decimal separator).", "", tokenizer.CurrentLineNumber);
}
private void ParseValues() {
while (tokenizer.HasNext()) {
List row = new List();
row.Add(NextValue(tokenizer));
while (tokenizer.HasNext() && tokenizer.Peek() == tokenizer.SeparatorToken) {
Expect(tokenizer.SeparatorToken);
row.Add(NextValue(tokenizer));
}
Expect(tokenizer.NewlineToken);
// all rows have to have the same number of values
// the first row defines how many samples are needed
if (rowValues.Count > 0 && rowValues[0].Count != row.Count) {
Error("The first row of the dataset has " + rowValues[0].Count + " columns." +
"\nLine " + tokenizer.CurrentLineNumber + " has " + row.Count + " columns.", "", tokenizer.CurrentLineNumber);
}
// add the current row to the collection of rows and start a new row
rowValues.Add(row);
row = new List();
}
}
private double NextValue(Tokenizer tokenizer) {
if (tokenizer.Peek() == tokenizer.SeparatorToken || tokenizer.Peek() == tokenizer.NewlineToken) return double.NaN;
Token current = tokenizer.Next();
if (current.type == TokenTypeEnum.Separator || current.type == TokenTypeEnum.String) {
return double.NaN;
} else if (current.type == TokenTypeEnum.Double) {
// just take the value
return current.doubleValue;
}
// found an unexpected token => throw error
Error("Unexpected token.", current.stringValue, tokenizer.CurrentLineNumber);
// this line is never executed because Error() throws an exception
throw new InvalidOperationException();
}
private void ParseVariableNames() {
// if the first line doesn't start with a double value then we assume that the
// first line contains variable names
if (tokenizer.HasNext() && tokenizer.Peek().type != TokenTypeEnum.Double) {
List tokens = new List();
Token valueToken;
valueToken = tokenizer.Next();
tokens.Add(valueToken);
while (tokenizer.HasNext() && tokenizer.Peek() == tokenizer.SeparatorToken) {
Expect(tokenizer.SeparatorToken);
valueToken = tokenizer.Next();
if (valueToken != tokenizer.NewlineToken) {
tokens.Add(valueToken);
}
}
if (valueToken != tokenizer.NewlineToken) {
Expect(tokenizer.NewlineToken);
}
variableNames = tokens.Select(x => x.stringValue.Trim()).ToList();
}
}
private void Expect(Token expectedToken) {
Token actualToken = tokenizer.Next();
if (actualToken != expectedToken) {
Error("Expected: " + expectedToken, actualToken.stringValue, tokenizer.CurrentLineNumber);
}
}
private void Error(string message, string token, int lineNumber) {
throw new DataFormatException("Error while parsing.\n" + message, token, lineNumber);
}
#endregion
}
}