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source: branches/OKBJavaConnector/ECJClient/src/ec/vector/IntegerVectorSpecies.java @ 6152

Last change on this file since 6152 was 6152, checked in by bfarka, 13 years ago

added ecj and custom statistics to communicate with the okb services #1441
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1/*
2  Copyright 2006 by Sean Luke
3  Licensed under the Academic Free License version 3.0
4  See the file "LICENSE" for more information
5*/
6
7
8package ec.vector;
9import ec.*;
10import ec.util.*;
11
12/*
13 * IntegerVectorSpecies.java
14 *
15 * Created: Tue Feb 20 13:26:00 2001
16 * By: Sean Luke
17 */
18
19/**
20 * IntegerVectorSpecies is a subclass of VectorSpecies with special constraints
21 * for integral vectors, namely ByteVectorIndividual, ShortVectorIndividual,
22 * IntegerVectorIndividual, and LongVectorIndividual.
23 
24 * <p>IntegerVectorSpecies can specify min/max numeric constraints on gene values
25 * in three different ways.
26 *
27 * <ol>
28 * <li> You may provide a default min and max value.
29 *      This is done by specifying:
30 *      <p><i>base</i>.<tt>min-gene</tt>
31 *      <br><i>base</i>.<tt>max-gene</tt>
32 *      <p><i>Note:</i> you <b>must</b> provide these values even if you don't use them,
33 *      as they're used as defaults by #2 and #3 below.
34 *<p>
35 * <li> You may provide min and max values for genes in segments (regions) along
36 *      the genome.  This is done by specifying:
37 *      <p><i>base</i>.<tt>num-segments</tt>
38 *      The segments may be defined by either start or end indices of genes.
39 *      This is controlled by specifying the value of:
40 *      <p><i>base</i>.<tt>segment-type</tt>
41 *      which can assume the value of start or end, with start being the default.
42 *      The indices are defined using Java array style, i.e. the first gene has the index of 0,
43 *      and the last gene has the index of genome-size - 1.
44 *      <p>Using this method, each segment is specified by<i>j</i>...
45 *      <p><i>base</i>.<tt>segment.</tt><i>j</i><tt>.start</tt>
46 *      <br><i>base</i>.<tt>segment.</tt><i>j</i><tt>.min-gene</tt>
47 *      <br><i>base</i>.<tt>segment.</tt><i>j</i><tt>.max-gene</tt>
48 *      if segment-type value was chosen as start or by:
49 *      <p><i>base</i>.<tt>segment.</tt><i>j</i><tt>.end</tt>
50 *      <br><i>base</i>.<tt>segment.</tt><i>j</i><tt>.min-gene</tt>
51 *      <br><i>base</i>.<tt>segment.</tt><i>j</i><tt>.max-gene</tt>
52 *      if segment-type value is equal to end.
53 *<p>
54 * <li> You may provide min and max values for each separate gene.
55 *      This is done by specifying (for each gene location <i>i</i> you wish to specify). 
56 *      <p><i>base</i>.<tt>min-gene</tt>.<i>i</i>
57 *      <br><i>base</i>.<tt>max-gene</tt>.<i>i</i>
58 * </ol>
59 *
60 * <p>Any settings for #3 override #2, and both override #1.
61 *
62 *
63 * <p><b>Parameters</b><br>
64 * <table>
65 * <tr><td valign=top><i>base</i>.<tt>min-gene</tt><br>
66 * <font size=-1>long (default=0)</font></td>
67 * <td valign=top>(the minimum gene value)</td></tr>
68 *
69 * <tr><td valign=top><i>base</i>.<tt>max-gene</tt><br>
70 * <font size=-1>long &gt;= <i>base</i>.min-gene</font></td>
71 * <td valign=top>(the maximum gene value)</td></tr>
72 *
73 * <tr><td valign=top><i>base</i>.<tt>min-gene</tt>.<i>i</i><br>
74 * <font size=-1>long (default=<i>base</i>.<tt>min-gene</tt>)</font></td>
75 * <td valign=top>(the minimum gene value for gene <i>i</i>)</td></tr>
76 *
77 * <tr><td valign=top><i>base</i>.<tt>max-gene</tt>.<i>i</i><br>
78 * <font size=-1>long &gt;= <i>base</i>.min-gene.<i>i</i> (default=<i>base</i>.<tt>max-gene</tt>)</font></td>
79 * <td valign=top>(the maximum gene value for gene <i>i</i>)</td></tr>
80 *
81 * <tr><td valign=top><i>base.</i>.<tt>num-segments</tt><br>
82 * <font size=-1>int &gt;= 1 (default=no segments used)</font></td>
83 * <td valign=top>(the number of gene segments defined)</td>
84 * </tr>
85 *
86 * <tr><td valign=top><i>base.</i>.<tt>segment-type</tt><br>
87 * <font size=-1>start (default) or end</font></td>
88 * <td valign=top>(defines the way in which segments are defined: either by providing start indices (segment-type=start) or by providing end indices (segment-type=end)</td>
89 * </tr>
90 *
91 * <tr><td valign=top><i>base.</i>.<tt>segment</tt>.<i>j</i>.<tt>start</tt><br>
92 * <font size=-1>0 &lt;= int &lt; genome length</font></td>
93 * <td valign=top>(the start index of gene segment <i>j</i> -- the end of a segment is before the start of the next segment)</td>
94 * <td valign=top>(used when the value of segment-type parameter is equal to start)</td>
95 * </tr>
96 *
97 * <tr><td valign=top><i>base.</i>.<tt>segment</tt>.<i>j</i>.<tt>end</tt><br>
98 * <font size=-1>0 &lt;= int &lt; genome length</font></td>
99 * <td valign=top>(the end of gene segment <i>j</i> -- the start of a segment is after the end of the previous segment)</td>
100 * <td valign=top>(used when the value of segment-type parameter is equal to end)</td>
101 * </tr>
102 *
103 * <tr><td valign=top><i>base.</i>.<tt>segment</tt>.<i>j</i>.<tt>min-gene</tt><br>
104 * <font size=-1>double (default=0.0)</font></td>
105 * <td valign=top>(the minimum gene value for segment <i>j</i>)</td>
106 * </tr>
107 *
108 * <tr><td valign=top><i>base.</i>.<tt>segment</tt>.<i>j</i>.<tt>max-gene</tt><br>
109 * <font size=-1>double &gt;= <i>base.</i>.<tt>segment</tt>.<i>j</i>.<tt>min-gene</tt></td>
110 * <td valign=top>(the maximum gene value for segment <i>j</i>)</td>
111 * </tr>
112 *
113 * </table>
114 * @author Sean Luke, Rafal Kicinger
115 * @version 1.0
116 */
117public class IntegerVectorSpecies extends VectorSpecies
118    {
119    public final static String P_MINGENE = "min-gene";
120    public final static String P_MAXGENE = "max-gene";
121   
122    public final static String P_NUM_SEGMENTS = "num-segments";
123       
124    public final static String P_SEGMENT_TYPE = "segment-type";
125
126    public final static String P_SEGMENT_START = "start";
127       
128    public final static String P_SEGMENT_END = "end";
129
130    public final static String P_SEGMENT = "segment";
131       
132    public long[] minGenes;
133    public long[] maxGenes;
134   
135    public long maxGene(int gene)
136        {
137        long[] m = maxGenes;
138        if (m.length <= gene)
139            {
140            if (!dynamicInitialSize && !warned) warnAboutGene(gene);
141            gene = m.length - 1;
142            }
143        return m[gene];
144        }
145   
146    public long minGene(int gene)
147        {
148        long[] m = minGenes;
149        if (m.length <= gene)
150            {
151            if (!dynamicInitialSize && !warned) warnAboutGene(gene);
152            gene = m.length - 1;
153            }
154        return m[gene];
155        }
156   
157    public boolean inNumericalTypeRange(long geneVal)
158        {
159        if (i_prototype instanceof ByteVectorIndividual)
160            return (geneVal <= Byte.MAX_VALUE && geneVal >= Byte.MIN_VALUE);
161        else if (i_prototype instanceof ShortVectorIndividual)
162            return (geneVal <= Short.MAX_VALUE && geneVal >= Short.MIN_VALUE);
163        else if (i_prototype instanceof IntegerVectorIndividual)
164            return (geneVal <= Integer.MAX_VALUE && geneVal >= Integer.MIN_VALUE);
165        else if (i_prototype instanceof LongVectorIndividual)
166            return true;  // geneVal is valid for all longs
167        else return false;  // dunno what the individual is...
168        }
169   
170    public void setup(final EvolutionState state, final Parameter base)
171        {
172        // keep in mind that the *species* variable has not been set yet.
173        super.setup(state,base);
174       
175        Parameter def = defaultBase();
176
177        // create the arrays
178        minGenes = new long[genomeSize];
179        maxGenes = new long[genomeSize];
180       
181       
182       
183
184        // LOADING GLOBAL MIN/MAX GENES
185        long minGene = state.parameters.getLongWithDefault(base.push(P_MINGENE),def.push(P_MINGENE),0);
186        long maxGene = state.parameters.getLong(base.push(P_MAXGENE),def.push(P_MAXGENE),minGene);
187        if (maxGene < minGene)
188            state.output.fatal("IntegerVectorSpecies must have a default min-gene which is <= the default max-gene",
189                base.push(P_MAXGENE),def.push(P_MAXGENE));
190       
191        for (int x = 0; x < genomeSize; x++)
192            {
193            minGenes[x] = minGene;
194            maxGenes[x] = maxGene;
195            }
196
197
198
199
200        // LOADING SEGMENTS
201
202        //Set number of segments to 0 by default
203        int numSegments = 0;
204        // Now check to see if segments of genes (genes having the same min and
205        // max values) exist
206        if (state.parameters.exists(base.push(P_NUM_SEGMENTS), def.push(P_NUM_SEGMENTS)))
207            {
208            if (dynamicInitialSize)
209                state.output.warnOnce("Using dynamic initial sizing, but per-segment min/max gene declarations.  This is probably wrong.  You probably want to use global min/max declarations.",
210                    base.push(P_NUM_SEGMENTS), def.push(P_NUM_SEGMENTS));
211                       
212            numSegments = state.parameters.getIntWithDefault(base.push(P_NUM_SEGMENTS),
213                def.push(P_NUM_SEGMENTS), 0);
214                       
215            if(numSegments == 0)
216                state.output.warning(
217                    "The number of genome segments has been defined to be equal to 0.\n"
218                    + "Hence, no genome segments will be defined.",
219                    base.push(P_NUM_SEGMENTS),
220                    def.push(P_NUM_SEGMENTS));
221            else if(numSegments < 0)
222                state.output.fatal(
223                    "Invalid number of genome segments: " + numSegments
224                    + "\nIt must be a nonnegative value.",
225                    base.push(P_NUM_SEGMENTS),
226                    def.push(P_NUM_SEGMENTS));
227                               
228            //read the type of segment definition using the default start value
229            String segmentType = state.parameters.getStringWithDefault(base.push(P_SEGMENT_TYPE),
230                def.push(P_SEGMENT_TYPE), P_SEGMENT_START);
231                       
232            if(segmentType.equalsIgnoreCase(P_SEGMENT_START))
233                initializeGenomeSegmentsByStartIndices(state, base, def, numSegments, minGene, maxGene);
234            else if(segmentType.equalsIgnoreCase(P_SEGMENT_END))
235                initializeGenomeSegmentsByEndIndices(state, base, def, numSegments, minGene, maxGene);
236            else
237                state.output.fatal(
238                    "Invalid specification of genome segment type: " + segmentType
239                    + "\nThe " + P_SEGMENT_TYPE + " parameter must have the value of " + P_SEGMENT_START + " or " + P_SEGMENT_END,
240                    base.push(P_SEGMENT_TYPE),
241                    def.push(P_SEGMENT_TYPE));
242
243
244            }
245
246
247
248        // LOADING PER-GENE VALUES
249
250        boolean foundStuff = false;
251        boolean warnedMin=false;
252        boolean warnedMax=false;
253        for(int x=0;x<genomeSize;x++)
254            {
255            if (!state.parameters.exists(base.push(P_MINGENE).push(""+x),base.push(P_MINGENE).push(""+x)))
256                {
257                if (foundStuff && !warnedMin)
258                    {
259                    state.output.warning("IntegerVectorSpecies has missing min-gene values for some genes.\n" +
260                        "The first one is gene #"+x+".", base.push(P_MINGENE).push(""+x),base.push(P_MINGENE).push(""+x));
261                    warnedMin = true;
262                    }
263                }
264            else
265                {
266                if (dynamicInitialSize)
267                    state.output.warnOnce("Using dynamic initial sizing, but per-gene min/max gene declarations.  This is probably wrong.  You probably want to use global min/max declarations.",
268                        base.push(P_MINGENE).push(""+x),base.push(P_MINGENE).push(""+x));
269
270                minGenes[x] = state.parameters.getLongWithDefault(base.push(P_MINGENE).push(""+x),base.push(P_MINGENE).push(""+x),minGene);
271                foundStuff = true;
272                }
273
274            if (!state.parameters.exists(base.push(P_MAXGENE).push(""+x),base.push(P_MAXGENE).push(""+x)))
275                {
276                if (foundStuff && !warnedMax)
277                    {
278                    state.output.warning("IntegerVectorSpecies has missing max-gene values for some genes.\n" +
279                        "The first one is gene #"+x+".", base.push(P_MAXGENE).push(""+x),base.push(P_MAXGENE).push(""+x));
280                    warnedMax = true;
281                    }
282                }
283            else
284                {
285                if (dynamicInitialSize)
286                    state.output.warnOnce("Using dynamic initial sizing, but per-gene min/max gene declarations.  This is probably wrong.  You probably want to use global min/max declarations.",
287                        base.push(P_MINGENE).push(""+x),base.push(P_MINGENE).push(""+x));
288
289                maxGenes[x] = state.parameters.getLongWithDefault(base.push(P_MAXGENE).push(""+x),base.push(P_MAXGENE).push(""+x),maxGene);
290                foundStuff = true;
291                }
292            }
293       
294       
295       
296       
297        // VERIFY
298        for(int x=0; x< genomeSize; x++)
299            {
300            if (maxGenes[x] < minGenes[x])
301                state.output.fatal("IntegerVectorSpecies must have a min-gene["+x+"] which is <= the max-gene["+x+"]");
302           
303            // check to see if these longs are within the data type of the particular individual
304            if (!inNumericalTypeRange(minGenes[x]))
305                state.output.fatal("This IntegerVectorSpecies has a prototype of the kind: "
306                    + i_prototype.getClass().getName() +
307                    ", but doesn't have a min-gene["+x+"] value within the range of this prototype's genome's data types");
308            if (!inNumericalTypeRange(maxGenes[x]))
309                state.output.fatal("This IntegerVectorSpecies has a prototype of the kind: "
310                    + i_prototype.getClass().getName() +
311                    ", but doesn't have a max-gene["+x+"] value within the range of this prototype's genome's data types");
312            }
313
314               
315        /*
316        //Debugging
317        for(int i = 0; i < minGenes.length; i++)
318        System.out.println("Min: " + minGenes[i] + ", Max: " + maxGenes[i]);
319        */
320        }
321   
322       
323    private void initializeGenomeSegmentsByStartIndices(final EvolutionState state,
324        final Parameter base,
325        final Parameter def,
326        int numSegments,
327        long minGene, long maxGene)
328        {
329        boolean warnedMin = false;
330        boolean warnedMax = false;
331        long currentSegmentMinGeneValue = Long.MAX_VALUE;
332        long currentSegmentMaxGeneValue = Long.MIN_VALUE;
333               
334        //loop in reverse order
335        int previousSegmentEnd = genomeSize;
336        int currentSegmentEnd = 0;
337               
338        for (int i = numSegments - 1; i >= 0; i--)
339            {
340            //check if the segment data exist
341            if (state.parameters.exists(base.push(P_SEGMENT).push(""+i).push(P_SEGMENT_START),
342                    def.push(P_SEGMENT).push(""+i).push(P_SEGMENT_START)))
343                {
344                //Read the index of the end gene specifying current segment
345                currentSegmentEnd = state.parameters.getInt(base.push(P_SEGMENT).push(""+i).push(P_SEGMENT_START),
346                    def.push(P_SEGMENT).push(""+i).push(P_SEGMENT_START));
347                               
348                }
349            else
350                {
351                state.output.fatal("Genome segment " + i + " has not been defined!" +
352                    "\nYou must specify start indices for " + numSegments + " segment(s)",
353                    base.push(P_SEGMENT).push(""+i).push(P_SEGMENT_START),
354                    base.push(P_SEGMENT).push(""+i).push(P_SEGMENT_START));
355                }
356                       
357            //check if the start index is valid
358            if(currentSegmentEnd >= previousSegmentEnd || currentSegmentEnd < 0)
359                state.output.fatal(
360                    "Invalid start index value for segment " + i + ": " + currentSegmentEnd
361                    +  "\nThe value must be smaller than " + previousSegmentEnd +
362                    " and greater than or equal to  " + 0);
363                       
364            //check if the index of the first segment is equal to 0
365            if(i == 0 && currentSegmentEnd != 0)
366                state.output.fatal(
367                    "Invalid start index value for the first segment " + i + ": " + currentSegmentEnd
368                    +  "\nThe value must be equal to " + 0);
369                       
370                       
371            //get min and max values of genes in this segment
372            if (!state.parameters.exists(base.push(P_SEGMENT).push(""+i).push(P_MINGENE),
373                    base.push(P_SEGMENT).push(""+i).push(P_MINGENE)))
374                {
375                if (!warnedMin)
376                    {
377                    state.output.warning(
378                        "IntegerVectorSpecies has missing min-gene values for some segments.\n"
379                        + "The first segment is #" + i + ".",
380                        base.push(P_SEGMENT).push(""+i),
381                        base.push(P_SEGMENT).push(""+i));
382                    warnedMin = true;
383                    }
384                               
385                //the min-gene value has not been defined for this segment so assume the global min value
386                currentSegmentMinGeneValue = minGene;
387                }
388            else  //get the min value for this segment
389                {
390                currentSegmentMinGeneValue = state.parameters.getLongWithDefault(
391                    base.push(P_SEGMENT).push(""+i).push(P_MINGENE),
392                    base.push(P_SEGMENT).push(""+i).push(P_MINGENE),
393                    minGene);
394                               
395                }
396                       
397            if (!state.parameters.exists(base.push(P_SEGMENT).push(""+i).push(P_MAXGENE),
398                    base.push(P_SEGMENT).push(""+i).push(P_MAXGENE)))
399                {
400                if (!warnedMax)
401                    {
402                    state.output.warning(
403                        "IntegerVectorSpecies has missing max-gene values for some segments.\n"
404                        + "The first segment is #" + i + ".",
405                        base.push(P_SEGMENT).push(""+i),
406                        base.push(P_SEGMENT).push(""+i));
407                    warnedMax = true;
408                    }
409                               
410                //the max-gen value has not been defined for this segment so assume the global max value
411                currentSegmentMaxGeneValue = maxGene;
412                               
413                }
414            else   //get the max value for this segment
415                {
416                currentSegmentMaxGeneValue = state.parameters.getLongWithDefault(
417                    base.push(P_SEGMENT).push(""+i).push(P_MAXGENE),
418                    base.push(P_SEGMENT).push(""+i).push(P_MAXGENE),
419                    maxGene);
420                }
421
422            //check is min is smaller than or equal to max
423            if (currentSegmentMaxGeneValue < currentSegmentMinGeneValue)
424                state.output.fatal(
425                    "IntegerVectorSpecies must have a min-gene value for segment "
426                    + i + " which is <= the max-gene value",
427                    base.push(P_SEGMENT).push(""+i).push(P_MAXGENE),
428                    base.push(P_SEGMENT).push(""+i).push(P_MAXGENE));
429
430                       
431            //and assign min and max values for all genes in this segment
432            for(int j = previousSegmentEnd-1; j >= currentSegmentEnd; j--)
433                {
434                minGenes[j] = currentSegmentMinGeneValue;
435                maxGenes[j] = currentSegmentMaxGeneValue;
436                }
437                       
438            previousSegmentEnd = currentSegmentEnd;
439                       
440            }
441               
442        }
443       
444    private void initializeGenomeSegmentsByEndIndices(final EvolutionState state,
445        final Parameter base,
446        final Parameter def,
447        int numSegments,
448        long minGene, long maxGene)
449        {
450        boolean warnedMin = false;
451        boolean warnedMax = false;
452        long currentSegmentMinGeneValue = Long.MAX_VALUE;
453        long currentSegmentMaxGeneValue = Long.MIN_VALUE;
454               
455        int previousSegmentEnd = -1; 
456        int currentSegmentEnd = 0;
457        // iterate over segments and set genes values for each segment
458        for (int i = 0; i < numSegments; i++)
459            {
460            //check if the segment data exist
461            if (state.parameters.exists(base.push(P_SEGMENT).push(""+i).push(P_SEGMENT_END), def.push(P_SEGMENT).push(""+i).push(P_SEGMENT_END)))
462                {
463                //Read the index of the end gene specifying current segment
464                currentSegmentEnd = state.parameters.getInt(base.push(P_SEGMENT).push(""+i).push(P_SEGMENT_END),
465                    def.push(P_SEGMENT).push(""+i).push(P_SEGMENT_END));
466                               
467                }
468            else
469                {
470                state.output.fatal("Genome segment " + i + " has not been defined!" +
471                    "\nYou must specify end indices for " + numSegments + " segment(s)",
472                    base.push(P_SEGMENT).push(""+i).push(P_SEGMENT_END),
473                    base.push(P_SEGMENT).push(""+i).push(P_SEGMENT_END));
474                }
475                       
476            //check if the end index is valid
477            if(currentSegmentEnd <= previousSegmentEnd || currentSegmentEnd >= genomeSize)
478                state.output.fatal(
479                    "Invalid end index value for segment " + i + ": " + currentSegmentEnd
480                    +  "\nThe value must be greater than " + previousSegmentEnd +
481                    " and smaller than " + genomeSize);
482                       
483            //check if the index of the final segment is equal to the genomeSize
484            if(i == numSegments - 1 && currentSegmentEnd != (genomeSize-1))
485                state.output.fatal(
486                    "Invalid end index value for the last segment " + i + ": " + currentSegmentEnd
487                    +  "\nThe value must be equal to the index of the last gene in the genome:  " + (genomeSize-1));
488                       
489                       
490            //get min and max values of genes in this segment
491            if (!state.parameters.exists(base.push(P_SEGMENT).push(""+i).push(P_MINGENE),
492                    base.push(P_SEGMENT).push(""+i).push(P_MINGENE)))
493                {
494                if (!warnedMin)
495                    {
496                    state.output.warning(
497                        "IntegerVectorSpecies has missing min-gene values for some segments.\n"
498                        + "The first segment is #" + i + ".",
499                        base.push(P_SEGMENT).push(""+i),
500                        base.push(P_SEGMENT).push(""+i));
501                    warnedMin = true;
502                    }
503                               
504                //the min-gene value has not been defined for this segment so assume the global min value
505                currentSegmentMinGeneValue = minGene;
506                }
507            else  //get the min value for this segment
508                {
509                currentSegmentMinGeneValue = state.parameters.getLongWithDefault(
510                    base.push(P_SEGMENT).push(""+i).push(P_MINGENE),
511                    base.push(P_SEGMENT).push(""+i).push(P_MINGENE),
512                    minGene);
513                               
514                }
515                       
516            if (!state.parameters.exists(base.push(P_SEGMENT).push(""+i).push(P_MAXGENE),
517                    base.push(P_SEGMENT).push(""+i).push(P_MAXGENE)))
518                {
519                if (!warnedMax)
520                    {
521                    state.output.warning(
522                        "IntegerVectorSpecies has missing max-gene values for some segments.\n"
523                        + "The first segment is #" + i + ".",
524                        base.push(P_SEGMENT).push(""+i),
525                        base.push(P_SEGMENT).push(""+i));
526                    warnedMax = true;
527                    }
528                               
529                //the max-gen value has not been defined for this segment so assume the global max value
530                currentSegmentMaxGeneValue = maxGene;
531                }
532            else   //get the max value for this segment
533                {
534                currentSegmentMaxGeneValue = state.parameters.getLongWithDefault(
535                    base.push(P_SEGMENT).push(""+i).push(P_MAXGENE),
536                    base.push(P_SEGMENT).push(""+i).push(P_MAXGENE),
537                    maxGene);
538                }
539
540            //check is min is smaller than or equal to max
541            if (currentSegmentMaxGeneValue < currentSegmentMinGeneValue)
542                state.output.fatal(
543                    "IntegerVectorSpecies must have a min-gene value for segment "
544                    + i + " which is <= the max-gene value",
545                    base.push(P_SEGMENT).push(""+i).push(P_MAXGENE),
546                    base.push(P_SEGMENT).push(""+i).push(P_MAXGENE));
547                       
548            //and assign min and max values for all genes in this segment
549            for(int j = previousSegmentEnd+1; j <= currentSegmentEnd; j++)
550                {
551                minGenes[j] = currentSegmentMinGeneValue;
552                maxGenes[j] = currentSegmentMaxGeneValue;
553                }
554                       
555            previousSegmentEnd = currentSegmentEnd;
556            }
557        }
558   
559    }
560
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