1 | using HeuristicLab.Common;
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2 | using HeuristicLab.Core;
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3 | using HeuristicLab.Data;
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4 | using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
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5 | using System;
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6 | using System.Collections.Generic;
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7 | using System.Globalization;
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8 | using System.Linq;
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9 |
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10 | namespace HeuristicLab.BioBoost.ProblemDescription {
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11 |
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12 | [StorableClass]
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13 | public class NeighborhoodTable : Item, IStringConvertibleMatrix {
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14 |
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15 | public struct Key : IComparable<Key> {
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16 | public Key(int id, int degree) {
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17 | Id = id;
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18 | Degree = degree;
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19 | }
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20 | public int Id;
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21 | public int Degree;
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22 |
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23 | public int CompareTo(Key other) {
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24 | return Id.CompareTo(other.Id) == 0 ? Degree.CompareTo(other.Degree) : Id.CompareTo(other.Id);
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25 | }
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26 |
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27 | public override string ToString() {
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28 | return string.Format("{0}[{1}]", Id, Degree);
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29 | }
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30 | }
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31 |
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32 | [Storable]
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33 | private Dictionary<Key, HashSet<int>> table;
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34 |
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35 | [Storable]
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36 | private Dictionary<int, HashSet<int>> degrees;
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37 |
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38 | [Storable]
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39 | private int maxNNeighborsByDegree;
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40 |
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41 | #region Construction & Cloning
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42 | [StorableConstructor]
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43 | protected NeighborhoodTable(bool isDeserializing) : base(isDeserializing) {}
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44 | protected NeighborhoodTable(NeighborhoodTable orig, Cloner cloner) : base(orig, cloner) {
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45 | table = orig.table.ToDictionary(p => p.Key, p => p.Value);
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46 | degrees = orig.degrees.ToDictionary(p => p.Key, p => p.Value);
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47 | maxNNeighborsByDegree = orig.maxNNeighborsByDegree;
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48 | }
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49 | public NeighborhoodTable() {
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50 | table = new Dictionary<Key, HashSet<int>>();
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51 | degrees = new Dictionary<int, HashSet<int>>();
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52 | maxNNeighborsByDegree = 0;
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53 | }
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54 | public override IDeepCloneable Clone(Cloner cloner) {
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55 | return new NeighborhoodTable(this, cloner);
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56 | }
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57 | #endregion
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58 |
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59 | public void AddEntry(int id1, int id2, int degree) {
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60 | var key = new Key(id1, degree);
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61 | HashSet<int> forwardSet;
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62 | if (table.TryGetValue(key, out forwardSet)) {
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63 | forwardSet.Add(id2);
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64 | maxNNeighborsByDegree = Math.Max(maxNNeighborsByDegree, forwardSet.Count);
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65 | } else {
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66 | table[key] = new HashSet<int> {id2};
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67 | maxNNeighborsByDegree = Math.Max(maxNNeighborsByDegree, 1);
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68 | }
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69 | HashSet<int> deg;
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70 | if (degrees.TryGetValue(id1, out deg)) {
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71 | deg.Add(degree);
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72 | } else {
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73 | degrees[id1] = new HashSet<int> {degree};
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74 | }
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75 | }
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76 |
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77 | public HashSet<int> GetNeighbors(int id, int degree) {
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78 | return table[new Key(id, degree)];
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79 | }
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80 |
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81 | public Dictionary<int, HashSet<int>> GetNeighbors(int id) {
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82 | return degrees[id].ToDictionary(deg => deg, deg => table[new Key(id, deg)]);
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83 | }
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84 |
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85 | public HashSet<int>[] GetNeighborsFlat(int id) {
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86 | HashSet<int> neighborDegrees;
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87 | if (degrees.TryGetValue(id, out neighborDegrees))
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88 | return neighborDegrees.OrderBy(d => d).Select(d => table[new Key(id, d)]).ToArray();
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89 | return new HashSet<int>[0];
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90 | }
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91 |
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92 | private double Sqr(double x) { return x*x; }
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93 |
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94 | public int GetRandomNeighbor(int id, IRandom random, int maxId) {
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95 | var neighbors = GetNeighborsFlat(id);
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96 | if (neighbors.Length == 0) return id;
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97 | var classIndex = (int) Math.Round(Sqr(random.NextDouble())*(neighbors.Length));
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98 | if (classIndex >= neighbors.Length)
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99 | return random.Next(maxId);
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100 | var clazz = neighbors[classIndex];
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101 | return clazz.ElementAt(random.Next(clazz.Count));
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102 | }
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103 |
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104 | public void Check() {
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105 | var errors = new List<string>();
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106 | foreach (var key in table.Keys) {
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107 | foreach (var neighbor in table[key]) {
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108 | HashSet<int> reverseNeighbors;
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109 | if (table.TryGetValue(new Key(neighbor, key.Degree), out reverseNeighbors))
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110 | if (reverseNeighbors.Contains(key.Id))
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111 | continue;
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112 | errors.Add(string.Format("Reverse relationship of {0}->{1} at degree {2} not found",
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113 | key.Id, neighbor, key.Degree));
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114 | }
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115 | }
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116 | var uniqueNeighbors = new Dictionary<int, HashSet<int>>();
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117 | foreach (var key in table.Keys) {
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118 | HashSet<int> neighbors;
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119 | if (!uniqueNeighbors.TryGetValue(key.Id, out neighbors)) {
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120 | neighbors = new HashSet<int>();
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121 | }
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122 | foreach (var neighbor in table[key]) {
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123 | if (neighbors.Contains(neighbor))
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124 | errors.Add(string.Format("Duplicate neighbor {0} of {1} with multiple degrees", neighbor, key.Id));
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125 | }
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126 | }
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127 | if (errors.Count > 0)
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128 | throw new Exception(string.Format("NeighborhoodTable Check Failed:\n{0}", string.Join("\n", errors)));
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129 | }
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130 |
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131 | #region Implementation of IStringConvertibleMatrix
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132 |
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133 | public bool Validate(string value, out string errorMessage) {
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134 | throw new NotImplementedException();
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135 | }
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136 |
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137 | public string GetValue(int rowIndex, int columnIndex) {
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138 | return table.OrderBy(p => p.Key).ElementAt(rowIndex).Value.ElementAt(columnIndex).ToString(CultureInfo.InvariantCulture);
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139 | }
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140 |
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141 | public bool SetValue(string value, int rowIndex, int columnIndex) {
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142 | throw new NotImplementedException();
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143 | }
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144 |
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145 | public int Rows { get { return table.Count; } set { throw new NotImplementedException(); } }
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146 | public int Columns { get { return 2+maxNNeighborsByDegree; } set { throw new NotImplementedException(); } }
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147 |
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148 | public IEnumerable<string> ColumnNames {
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149 | get {
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150 | return new[] {"ID", "Degree"}.Concat(
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151 | Enumerable.Range(0, maxNNeighborsByDegree).Select(n => string.Format("Neighbor {0}", n)));
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152 | }
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153 | set { throw new NotImplementedException(); }
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154 | }
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155 | public IEnumerable<string> RowNames {
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156 | get { return Enumerable.Range(0, Rows).Select(i => i.ToString(CultureInfo.InvariantCulture)); }
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157 | set { throw new NotImplementedException(); }
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158 | }
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159 |
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160 | public bool SortableView { get { return false; } set { throw new NotImplementedException(); } }
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161 | public bool ReadOnly { get { return true; } }
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162 |
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163 | public event EventHandler ColumnsChanged;
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164 | public event EventHandler RowsChanged;
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165 | public event EventHandler ColumnNamesChanged;
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166 | public event EventHandler RowNamesChanged;
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167 | public event EventHandler SortableViewChanged;
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168 | public event EventHandler<EventArgs<int, int>> ItemChanged;
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169 | public event EventHandler Reset;
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170 |
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171 | #endregion
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172 |
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173 | public NeighborhoodTable CopyAndRemoveIndices(IEnumerable<int> removedIndices) {
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174 | if (table.Count == 0)
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175 | return new NeighborhoodTable();
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176 | var removedIndexSet = new HashSet<int>(removedIndices);
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177 | int i = 0;
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178 | var mapping = Enumerable
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179 | .Range(0, table.Keys.Select(k => k.Id).Max() + 1)
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180 | .ToDictionary(
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181 | oldIdx => oldIdx,
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182 | oldIdx => {
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183 | if (removedIndexSet.Contains(oldIdx)) return -1;
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184 | return i++;
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185 | });
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186 | var newTable = new NeighborhoodTable();
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187 | foreach (var entry in table.Keys) {
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188 | foreach (var neighbor in table[entry]) {
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189 | var newSource = mapping[entry.Id];
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190 | var newTarget = mapping[neighbor];
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191 | if (newSource != -1 && newTarget != -1) {
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192 | newTable.AddEntry(newSource, newTarget, entry.Degree);
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193 | }
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194 | }
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195 | }
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196 | newTable.Check();
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197 | return newTable;
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198 | }
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199 | }
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200 | }
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