source: branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisPhenotypicDiversityAnalyzer.cs @ 11271

using System.Linq;
using HeuristicLab.Analysis;
using HeuristicLab.Core;
using HeuristicLab.Data;
using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
using HeuristicLab.Parameters;
using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;

namespace HeuristicLab.Problems.DataAnalysis.Symbolic.Analyzers {
  [Item("SymbolicDataAnalysisPhenotypicDiversityAnalyzer", "An analyzer which calculates diversity based on the phenotypic similarity between trees")]
  [StorableClass]
  public class SymbolicDataAnalysisPhenotypicDiversityAnalyzer : SingleObjectivePopulationDiversityAnalyzer {
    private const string SymbolicExpressionTreeParameterName = "SymbolicExpressionTree";
    private const string EvaluatedValuesParameterName = "EstimatedValues";
    private const string SymbolicDataAnalysisTreeInterpreterParameterName = "SymbolicExpressionTreeInterpreter";
    private const string ProblemDataParameterName = "ProblemData";
    private const string EstimationLimitsParameterName = "EstimationLimits";

    public IScopeTreeLookupParameter<ISymbolicExpressionTree> SymbolicExpressionTreeParameter {
      get { return (IScopeTreeLookupParameter<ISymbolicExpressionTree>)Parameters[SymbolicExpressionTreeParameterName]; }
    }

    private IScopeTreeLookupParameter<DoubleArray> EvaluatedValuesParameter {
      get { return (IScopeTreeLookupParameter<DoubleArray>)Parameters[EvaluatedValuesParameterName]; }
    }

    public ILookupParameter<ISymbolicDataAnalysisExpressionTreeInterpreter> SymbolicDataAnalysisTreeInterpreterParameter {
      get { return (ILookupParameter<ISymbolicDataAnalysisExpressionTreeInterpreter>)Parameters[SymbolicDataAnalysisTreeInterpreterParameterName]; }
    }
    public IValueLookupParameter<IDataAnalysisProblemData> ProblemDataParameter {
      get { return (IValueLookupParameter<IDataAnalysisProblemData>)Parameters[ProblemDataParameterName]; }
    }

    public IValueLookupParameter<DoubleLimit> EstimationLimitsParameter {
      get { return (IValueLookupParameter<DoubleLimit>)Parameters[EstimationLimitsParameterName]; }
    }

    public SymbolicDataAnalysisPhenotypicDiversityAnalyzer() {
      SimilarityCalculator = new PhenotypicSimilarityCalculator();

      Parameters.Add(new ScopeTreeLookupParameter<ISymbolicExpressionTree>(SymbolicExpressionTreeParameterName, "The symbolic expression trees."));
      Parameters.Add(new ScopeTreeLookupParameter<DoubleArray>(EvaluatedValuesParameterName, "Intermediate estimated values to be saved in the scopes."));
      Parameters.Add(new LookupParameter<ISymbolicDataAnalysisExpressionTreeInterpreter>(SymbolicDataAnalysisTreeInterpreterParameterName, "The interpreter that should be used to calculate the output values of the symbolic data analysis tree."));
      Parameters.Add(new ValueLookupParameter<IDataAnalysisProblemData>(ProblemDataParameterName, "The problem data on which the symbolic data analysis solution should be evaluated."));
      Parameters.Add(new ValueLookupParameter<DoubleLimit>(EstimationLimitsParameterName, "The upper and lower limit that should be used as cut off value for the output values of symbolic data analysis trees."));
    }

    public override IOperation Apply() {
      var trees = SymbolicExpressionTreeParameter.ActualValue;
      var interpreter = SymbolicDataAnalysisTreeInterpreterParameter.ActualValue;
      var ds = ProblemDataParameter.ActualValue.Dataset;
      var rows = ProblemDataParameter.ActualValue.TrainingIndices;

      var evaluatedValues = new ItemArray<DoubleArray>(trees.Select(t => new DoubleArray(interpreter.GetSymbolicExpressionTreeValues(t, ds, rows).ToArray())));

      EvaluatedValuesParameter.ActualValue = evaluatedValues;

      return base.Apply();
    }
  }
}