#region License Information
/* HeuristicLab
* Copyright (C) 2002-2012 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
*
* This file is part of HeuristicLab.
*
* HeuristicLab is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* HeuristicLab is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with HeuristicLab. If not, see .
*/
#endregion
using System.Collections.Generic;
using System.Linq;
using System.Text;
using HeuristicLab.Analysis;
using HeuristicLab.Common;
using HeuristicLab.Core;
using HeuristicLab.Data;
using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
using HeuristicLab.Parameters;
using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
namespace HeuristicLab.Problems.DataAnalysis.Symbolic {
[Item("SymbolicDataAnalysisAlleleFrequencyAnalyzer", "")]
[StorableClass]
public sealed class SymbolicDataAnalysisAlleleFrequencyAnalyzer : AlleleFrequencyAnalyzer, ISymbolicDataAnalysisAnalyzer {
private const string AlleleTreeDepthParameterName = "AlleleTreeDepth";
#region parameter properties
public IScopeTreeLookupParameter SymbolicExpressionTreeParameter {
get { return SolutionParameter; }
}
public ILookupParameter ResultCollectionParameter {
get { return ResultsParameter; }
}
public IFixedValueParameter AlleleTreeDepthParameter {
get { return (IFixedValueParameter)Parameters[AlleleTreeDepthParameterName]; }
}
#endregion
#region properties
public int AlleleTreeDepth {
get { return AlleleTreeDepthParameter.Value.Value; }
set { AlleleTreeDepthParameter.Value.Value = value; }
}
#endregion
[StorableConstructor]
private SymbolicDataAnalysisAlleleFrequencyAnalyzer(bool deserializing) : base(deserializing) { }
private SymbolicDataAnalysisAlleleFrequencyAnalyzer(SymbolicDataAnalysisAlleleFrequencyAnalyzer original, Cloner cloner) : base(original, cloner) { }
public SymbolicDataAnalysisAlleleFrequencyAnalyzer()
: base() {
Parameters.Add(new FixedValueParameter(AlleleTreeDepthParameterName, "The depth of subtrees that should be considered as allele", new IntValue(2)));
}
public override IDeepCloneable Clone(Cloner cloner) {
return new SymbolicDataAnalysisAlleleFrequencyAnalyzer(this, cloner);
}
protected override Allele[] CalculateAlleles(ISymbolicExpressionTree solution) {
return CalculateAlleles(solution, AlleleTreeDepth);
}
public static Allele[] CalculateAlleles(ISymbolicExpressionTree solution, int alleleTreedepth) {
return GetAllSubtreesOfDepth(solution, alleleTreedepth)
.AsParallel()
.Select(t => GetAlleleFromSubtreeOfDepth(t, alleleTreedepth))
.ToArray();
}
private static Allele GetAlleleFromSubtreeOfDepth(ISymbolicExpressionTreeNode tree, int d) {
string textualRepresentation = GetTextualRepresentationFromSubtreeOfDepth(tree, d);
return new Allele(textualRepresentation);
}
private static string GetTextualRepresentationFromSubtreeOfDepth(ISymbolicExpressionTreeNode tree, int d) {
if (d == 0) return "";
StringBuilder builder = new StringBuilder();
var varTreeNode = tree as VariableTreeNode;
var constTreeNode = tree as ConstantTreeNode;
if (varTreeNode != null) {
builder.Append("(var " + varTreeNode.VariableName);
} else if (constTreeNode != null) {
builder.Append("(const");
} else {
builder.Append("(" + tree.ToString());
}
for (int i = 0; i < tree.SubtreeCount; i++) {
builder.Append(" " + GetTextualRepresentationFromSubtreeOfDepth(tree.GetSubtree(i), d - 1));
}
builder.Append(")");
return builder.ToString();
}
private static IEnumerable GetAllSubtreesOfDepth(ISymbolicExpressionTree solution, int d) {
return from node in solution.IterateNodesPostfix()
where node.GetDepth() >= d
select node;
}
}
}