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source: branches/GBT/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding/3.4/Creators/FullTreeCreator.cs @ 12495

Last change on this file since 12495 was 12495, checked in by gkronber, 9 years ago

#2261: merged trunk changes to branch
r12494
#2403: added a null check in the MatlabParameterVectorEvaluator to prevent exceptions when clearstate is called


r12493
#2369: added support for squared errors and relative errors to error-characteristic-curve view


r12492
#2392: implemented PearsonsRCalculator to fix incorrect correlation values in the correlation matrix.


r12491
#2402 don't set task state to waiting when it fails


r12490
#2401 added missing Mono.Cecil plugin dependency


r12488
#2400 - Interfaces for Capaciated-, PickupAndDelivery- and TimeWindowed-ProblemInstances now specify an additional penalty parameter to set the current penalty factor for the constraint relaxation. - The setter of the penalty-property in ...


r12485
#2374 made RegressionSolution and ClassificationSolution non-abstract


r12482
#2320: Fixed warnings in unit test solutions introduced in r12420 by marking methods as obsolete.


r12481
#2320: Fixed AfterDeserialization of GEArtifialAntEvaluator.


r12480
#2320: Fixed error in symbolicexpressiontree crossover regarding the wiring of lookup parameters if persisted file is loaded.


r12479
#2397 moved GeoIP project into ExtLibs


r12478
#2329 fixed bug in simple code editor


r12476
#2331 removed outdated plugins


r12475
#2368 fixed compile warnings


r12474
#2399 worked on Mono project prepare script


r12473
#2329 added a simple code editor for Linux


r12472
#2399 - fixed MathJax.js file name - worked on Mono project prepare script


r12471
#2399 worked on Mono project prepare script


r12470
#2399 fixed pre-build events in project files


r12465
#2399 worked on mono project prepare script


r12464
#2399 added patch to project


r12463
#2399 fixed EPPlus so that it compiles on Linux


r12461
#2398: Skip root and start symbols when calculating impacts and replacement values in the pruning operators.


r12458
#2354 show label when no data is displayed and don't show the legend


r12457
#2353 removed duplicated call to Any() in Hive Status page


r12456
#2368 fixed modifier


r12455
#2368 added support in persistence for typecaches in streams


r12445
#2394: Changed Web.config compilation from debug to release to force script bundling. Changed history loading type from lazy to eager loading to increase performance. Fixed "getCoreStatus" typo in statusCtrl.js


r12443
#2394: Fixed UserTaskQuery and GetStatusHistory in the WebApp.Status plugin


r12442
#2394 added nuget folders to svn ignore list


r12435
#2394: Improved PluginManager and updated hive status monitor.


r12434
#2396 added symbolic expression tree formatter for C#


r12433
#2395: Minor change in DoubleValue.GetValue.


r12432
#2395 Use simple round-trip format for doubles because G17 prints some strange numbers (20.22 to 20.219999999999999999). Some accuracy can still be lost on 64bit machines, but should be very rare and minimal. double.MaxValue can still be pa...


r12431
#2395 Fixed parsing issues by using the G17 format.


r12430
#2394 added missing package config


r12429
#2394 added missing package config


r12428
#2394 added web app and status page to trunk


r12424
#2320: Adapted plugin file and updated project file of SymbolicExpressionTreeEncoding.


r12422
#2320: Merged the encoding class and all accompanying changes in the trunk.


r12401
#2387 Fixed a bug where the automatic selection of the first element behaved differently for the NewItemDialog.


r12400
#2387 Forgot to commit a file.


r12399
#2387 - Added context-menu for expanding and collapsing tree-nodes. - Improve response time when expanding/collapsing all nodes for TypeSelector and NewItemDialog.


r12398
#2387 - Added clearSearch-button in TypeSelector. - Adapted behavior of TypeSelector and NewItemDialog that a selected node stays selected as long as it matches the search criteria.


r12397
#2387 - Adapted behavior of the matching in the TypeSelector that it behave the same as the NewItemDialog. The search string is tokenized by space and matches if all tokens are contained, (eg. "Sym Reg" matches "SymbolicRegression...")...


r12393
#2025 - Removed Expand/CollapseAll buttons. - Removed cycling of items.


r12392
#2386: Updated GetHashCode method in the EnumerableBoolEqualityComparer.


File size: 7.3 KB
Line 
1#region License Information
2/* HeuristicLab
3 * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
4 *
5 * This file is part of HeuristicLab.
6 *
7 * HeuristicLab is free software: you can redistribute it and/or modify
8 * it under the terms of the GNU General Public License as published by
9 * the Free Software Foundation, either version 3 of the License, or
10 * (at your option) any later version.
11 *
12 * HeuristicLab is distributed in the hope that it will be useful,
13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
15 * GNU General Public License for more details.
16 *
17 * You should have received a copy of the GNU General Public License
18 * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
19 */
20#endregion
21
22using System;
23using System.Linq;
24using HeuristicLab.Common;
25using HeuristicLab.Core;
26using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
27using HeuristicLab.PluginInfrastructure;
28
29namespace HeuristicLab.Encodings.SymbolicExpressionTreeEncoding {
30  [NonDiscoverableType]
31  [StorableClass]
32  [Item("FullTreeCreator", "An operator that creates new symbolic expression trees using the 'Full' method")]
33  public class FullTreeCreator : SymbolicExpressionTreeCreator,
34                                 ISymbolicExpressionTreeSizeConstraintOperator,
35                                 ISymbolicExpressionTreeGrammarBasedOperator {
36
37    [StorableConstructor]
38    protected FullTreeCreator(bool deserializing) : base(deserializing) { }
39    protected FullTreeCreator(FullTreeCreator original, Cloner cloner) : base(original, cloner) { }
40
41    public FullTreeCreator() : base() { }
42
43    public override IDeepCloneable Clone(Cloner cloner) {
44      return new FullTreeCreator(this, cloner);
45    }
46
47
48    protected override ISymbolicExpressionTree Create(IRandom random) {
49      return Create(random, ClonedSymbolicExpressionTreeGrammarParameter.ActualValue,
50          MaximumSymbolicExpressionTreeLengthParameter.ActualValue.Value, MaximumSymbolicExpressionTreeDepthParameter.ActualValue.Value);
51    }
52
53    public override ISymbolicExpressionTree CreateTree(IRandom random, ISymbolicExpressionGrammar grammar, int maxTreeLength, int maxTreeDepth) {
54      return Create(random, grammar, maxTreeLength, maxTreeDepth);
55    }
56
57    /// <summary>
58    /// Create a symbolic expression tree using the 'Full' method.
59    /// Function symbols are used for all nodes situated on a level above the maximum tree depth.
60    /// Nodes on the last tree level will have Terminal symbols.
61    /// </summary>
62    /// <param name="random">Random generator</param>
63    /// <param name="grammar">Available tree grammar</param>
64    /// <param name="maxTreeDepth">Maximum tree depth</param>
65    /// <param name="maxTreeLength">Maximum tree length. This parameter is not used.</param>
66    /// <returns></returns>
67    public static ISymbolicExpressionTree Create(IRandom random, ISymbolicExpressionGrammar grammar, int maxTreeLength, int maxTreeDepth) {
68      var tree = new SymbolicExpressionTree();
69      var rootNode = (SymbolicExpressionTreeTopLevelNode)grammar.ProgramRootSymbol.CreateTreeNode();
70      if (rootNode.HasLocalParameters) rootNode.ResetLocalParameters(random);
71      rootNode.SetGrammar(grammar.CreateExpressionTreeGrammar());
72
73      var startNode = (SymbolicExpressionTreeTopLevelNode)grammar.StartSymbol.CreateTreeNode();
74      if (startNode.HasLocalParameters) startNode.ResetLocalParameters(random);
75      startNode.SetGrammar(grammar.CreateExpressionTreeGrammar());
76
77      rootNode.AddSubtree(startNode);
78
79      Create(random, startNode, maxTreeDepth - 2);
80      tree.Root = rootNode;
81      return tree;
82    }
83
84    public static void Create(IRandom random, ISymbolicExpressionTreeNode seedNode, int maxDepth) {
85      // make sure it is possible to create a trees smaller than maxDepth
86      if (seedNode.Grammar.GetMinimumExpressionDepth(seedNode.Symbol) > maxDepth)
87        throw new ArgumentException("Cannot create trees of depth " + maxDepth + " or smaller because of grammar constraints.", "maxDepth");
88
89
90      int arity = seedNode.Grammar.GetMaximumSubtreeCount(seedNode.Symbol);
91      // Throw an exception if the seedNode happens to be a terminal, since in this case we cannot grow a tree.
92      if (arity <= 0)
93        throw new ArgumentException("Cannot grow tree. Seed node shouldn't have arity zero.");
94
95      var allowedSymbols = seedNode.Grammar.AllowedSymbols
96        .Where(s => s.InitialFrequency > 0.0 && seedNode.Grammar.GetMaximumSubtreeCount(s) > 0)
97        .ToList();
98
99      for (var i = 0; i < arity; i++) {
100        var possibleSymbols = allowedSymbols
101          .Where(s => seedNode.Grammar.IsAllowedChildSymbol(seedNode.Symbol, s, i))
102          .ToList();
103        var weights = possibleSymbols.Select(s => s.InitialFrequency).ToList();
104
105#pragma warning disable 612, 618
106        var selectedSymbol = possibleSymbols.SelectRandom(weights, random);
107#pragma warning restore 612, 618
108
109        var tree = selectedSymbol.CreateTreeNode();
110        if (tree.HasLocalParameters) tree.ResetLocalParameters(random);
111        seedNode.AddSubtree(tree);
112      }
113
114      // Only iterate over the non-terminal nodes (those which have arity > 0)
115      // Start from depth 2 since the first two levels are formed by the rootNode and the seedNode
116      foreach (var subTree in seedNode.Subtrees)
117        if (subTree.Grammar.GetMaximumSubtreeCount(subTree.Symbol) > 0)
118          RecursiveCreate(random, subTree, 2, maxDepth);
119    }
120
121    private static void RecursiveCreate(IRandom random, ISymbolicExpressionTreeNode root, int currentDepth, int maxDepth) {
122      var arity = root.Grammar.GetMaximumSubtreeCount(root.Symbol);
123      // In the 'Full' grow method, we cannot have terminals on the intermediate tree levels.
124      if (arity <= 0)
125        throw new ArgumentException("Cannot grow node of arity zero. Expected a function node.");
126
127      var allowedSymbols = root.Grammar.AllowedSymbols
128        .Where(s => s.InitialFrequency > 0.0)
129        .ToList();
130
131      for (var i = 0; i < arity; i++) {
132        var possibleSymbols = allowedSymbols
133          .Where(s => root.Grammar.IsAllowedChildSymbol(root.Symbol, s, i) &&
134            root.Grammar.GetMinimumExpressionDepth(s) - 1 <= maxDepth - currentDepth &&
135            root.Grammar.GetMaximumExpressionDepth(s) > maxDepth - currentDepth)
136          .ToList();
137        if (!possibleSymbols.Any())
138          throw new InvalidOperationException("No symbols are available for the tree.");
139        var weights = possibleSymbols.Select(s => s.InitialFrequency).ToList();
140
141#pragma warning disable 612, 618
142        var selectedSymbol = possibleSymbols.SelectRandom(weights, random);
143#pragma warning restore 612, 618
144       
145        var tree = selectedSymbol.CreateTreeNode();
146        if (tree.HasLocalParameters) tree.ResetLocalParameters(random);
147        root.AddSubtree(tree);
148      }
149
150      //additional levels should only be added if the maximum depth is not reached yet
151      if (maxDepth > currentDepth) {
152        foreach (var subTree in root.Subtrees)
153          if (subTree.Grammar.GetMaximumSubtreeCount(subTree.Symbol) > 0)
154            RecursiveCreate(random, subTree, currentDepth + 1, maxDepth);
155      }
156    }
157  }
158}
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