#region License Information
/* HeuristicLab
* Copyright (C) 2002-2010 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
*
* This file is part of HeuristicLab.
*
* HeuristicLab is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* HeuristicLab is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with HeuristicLab. If not, see .
*/
#endregion
using System.Linq;
using HeuristicLab.Analysis.FitnessLandscape.DataTables;
using HeuristicLab.Common;
using HeuristicLab.Core;
using HeuristicLab.Data;
using HeuristicLab.Operators;
using HeuristicLab.Optimization.Operators;
using HeuristicLab.Parameters;
using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
namespace HeuristicLab.Analysis.FitnessLandscape.Analysis {
[StorableClass]
public class RuggednessAnalyzer : AlgorithmOperator, IQualityTrailAnalyzer {
public bool EnabledByDefault {
get { return false; }
}
#region Parameters
public LookupParameter QualityTrailParameter {
get { return (LookupParameter)Parameters["Quality Trail"]; }
}
public LookupParameter CorrelationLengthTableParameter {
get { return (LookupParameter)Parameters["CorrelationLengthTable"]; }
}
public LookupParameter AutocorrelationParameter {
get { return (LookupParameter)Parameters["Autocorrelation"]; }
}
public LookupParameter ResultsParameter {
get { return (LookupParameter)Parameters["Results"]; }
}
public LookupParameter AutoCorrelation1Parameter {
get { return (LookupParameter)Parameters["AutoCorrelation1"]; }
}
public LookupParameter CorrelationLengthParameter {
get { return (LookupParameter)Parameters["CorrelationLength"]; }
}
#endregion
[StorableConstructor]
protected RuggednessAnalyzer(bool deserializing) : base(deserializing) { }
protected RuggednessAnalyzer(RuggednessAnalyzer original, Cloner cloner) : base(original, cloner) { }
public RuggednessAnalyzer() {
Parameters.Add(new LookupParameter("Quality Trail", "The quality of the solution"));
Parameters.Add(new LookupParameter("CorrelationLengthTable", "Maximum nr of steps between statistically significantly correlated quality values"));
Parameters.Add(new LookupParameter("Autocorrelation", "Autocorrelation function of successive quality values"));
Parameters.Add(new LookupParameter("Results", "The collection of all results of this algorithm"));
Parameters.Add(new LookupParameter("AutoCorrelation1", "Autocorrelation for one mutation step."));
Parameters.Add(new LookupParameter("CorrelationLength", "The correlation length."));
var resultsCollector = new ResultsCollector();
resultsCollector.CollectedValues.Add(new LookupParameter(CorrelationLengthTableParameter.Name));
resultsCollector.CollectedValues.Add(new LookupParameter(AutocorrelationParameter.Name));
resultsCollector.CollectedValues.Add(new LookupParameter(AutoCorrelation1Parameter.Name));
resultsCollector.CollectedValues.Add(new LookupParameter(CorrelationLengthParameter.Name));
OperatorGraph.InitialOperator = resultsCollector;
resultsCollector.Successor = null;
}
public override IDeepCloneable Clone(Cloner cloner) {
return new RuggednessAnalyzer(this, cloner);
}
public override IOperation Apply() {
DataTable correlationLengthTable = GetOrCreateCorrelationLengthTable();
AutoCorrelationTable autocorrelationTable = GetOrCreateAutoCorrelationTable();
DataTable qualityTrail = QualityTrailParameter.ActualValue;
if (qualityTrail != null && qualityTrail.Rows.Count > 0) {
double[] autocorrelationValues;
int correlationLength = RuggednessCalculator.CalculateCorrelationLength(qualityTrail.Rows.First().Values.ToArray(), out autocorrelationValues);
correlationLengthTable.Rows["Correlation Length"].Values.Add(correlationLength);
autocorrelationTable.Rows["Auto Correlation"].Values.Clear();
autocorrelationTable.Rows["Auto Correlation"].Values.AddRange(autocorrelationValues);
CorrelationLengthParameter.ActualValue = new IntValue(correlationLength);
AutoCorrelation1Parameter.ActualValue = new DoubleValue(autocorrelationValues.Length > 1 ? autocorrelationValues[1] : 0.0);
}
return base.Apply();
}
private AutoCorrelationTable GetOrCreateAutoCorrelationTable() {
AutoCorrelationTable autocorrelationTable = AutocorrelationParameter.ActualValue;
if (autocorrelationTable == null) {
autocorrelationTable = new AutoCorrelationTable("Auto Correlation");
AutocorrelationParameter.ActualValue = autocorrelationTable;
var row = new DataRow("Auto Correlation");
row.VisualProperties.StartIndexZero = true;
autocorrelationTable.Rows.Add(row);
}
return autocorrelationTable;
}
private DataTable GetOrCreateCorrelationLengthTable() {
DataTable correlationLengthTable = CorrelationLengthTableParameter.ActualValue;
if (correlationLengthTable == null) {
correlationLengthTable = new DataTable("Correlation Length");
CorrelationLengthTableParameter.ActualValue = correlationLengthTable;
correlationLengthTable.Rows.Add(new DataRow("Correlation Length"));
}
return correlationLengthTable;
}
}
}