| 1 | #region License Information
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| 2 | /* HeuristicLab
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| 3 | * Copyright (C) 2002-2008 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
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| 4 | *
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| 5 | * This file is part of HeuristicLab.
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| 6 | *
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| 7 | * HeuristicLab is free software: you can redistribute it and/or modify
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| 8 | * it under the terms of the GNU General Public License as published by
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| 9 | * the Free Software Foundation, either version 3 of the License, or
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| 10 | * (at your option) any later version.
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| 11 | *
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| 12 | * HeuristicLab is distributed in the hope that it will be useful,
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| 13 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 14 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 15 | * GNU General Public License for more details.
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| 16 | *
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| 17 | * You should have received a copy of the GNU General Public License
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| 18 | * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
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| 19 | */
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| 20 | #endregion
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| 21 |
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| 22 | using System;
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| 23 | using System.Collections.Generic;
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| 24 | using System.Linq;
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| 25 | using System.Text;
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| 26 | using HeuristicLab.Core;
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| 27 | using System.Xml;
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| 28 | using System.Diagnostics;
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| 29 | using HeuristicLab.DataAnalysis;
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| 30 | using HeuristicLab.Operators;
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| 31 | using HeuristicLab.Random;
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| 32 | using HeuristicLab.Selection;
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| 33 | using HeuristicLab.Logging;
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| 34 | using HeuristicLab.Data;
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| 35 | using HeuristicLab.Operators.Programmable;
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| 36 |
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| 37 | namespace HeuristicLab.GP.StructureIdentification {
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| 38 | public class StandardGP : ItemBase, IEditable {
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| 39 | private IntData maxGenerations = new IntData();
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| 40 | public int MaxGenerations {
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| 41 | get { return maxGenerations.Data; }
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| 42 | set { maxGenerations.Data = value; }
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| 43 | }
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| 44 |
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| 45 | private IntData tournamentSize = new IntData();
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| 46 | public int TournamentSize {
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| 47 | get { return tournamentSize.Data; }
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| 48 | set { tournamentSize.Data = value; }
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| 49 | }
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| 50 | private DoubleData mutationRate = new DoubleData();
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| 51 | public double MutationRate {
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| 52 | get { return mutationRate.Data; }
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| 53 | set { mutationRate.Data = value; }
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| 54 | }
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| 55 | private IntData parents = new IntData();
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| 56 | private IntData populationSize = new IntData();
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| 57 | public int PopulationSize {
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| 58 | get { return populationSize.Data; }
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| 59 | set {
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| 60 | populationSize.Data = value;
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| 61 | parents.Data = value * 2;
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| 62 | }
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| 63 | }
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| 64 |
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| 65 | private BoolData setSeedRandomly = new BoolData();
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| 66 | public bool SetSeedRandomly {
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| 67 | get { return setSeedRandomly.Data; }
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| 68 | set { setSeedRandomly.Data = value; }
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| 69 | }
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| 70 |
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| 71 | private IntData seed = new IntData();
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| 72 | public int Seed {
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| 73 | get { return seed.Data; }
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| 74 | set { seed.Data = value; }
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| 75 | }
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| 76 |
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| 77 | public IOperator ProblemInjector {
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| 78 | get { return algorithm.SubOperators[0]; }
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| 79 | set {
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| 80 | value.Name = "ProblemInjector";
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| 81 | algorithm.RemoveSubOperator(0);
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| 82 | algorithm.AddSubOperator(value, 0);
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| 83 | }
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| 84 | }
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| 85 |
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| 86 | private IntData elites = new IntData();
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| 87 | public int Elites {
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| 88 | get { return elites.Data; }
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| 89 | set { elites.Data = value; }
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| 90 | }
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| 91 |
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| 92 | private int maxTreeSize = 50;
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| 93 | private int maxTreeHeight = 8;
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| 94 | private double punishmentFactor = 10.0;
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| 95 | private bool useEstimatedTargetValue = false;
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| 96 | private double fullTreeShakingFactor = 0.1;
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| 97 | private double onepointShakingFactor = 1.0;
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| 98 | private IOperator algorithm;
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| 99 |
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| 100 | private SequentialEngine.SequentialEngine engine;
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| 101 | public IEngine Engine {
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| 102 | get { return engine; }
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| 103 | }
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| 104 |
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| 105 | public StandardGP() {
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| 106 | PopulationSize = 10000;
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| 107 | MaxGenerations = 100;
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| 108 | TournamentSize = 7;
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| 109 | MutationRate = 0.15;
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| 110 | Elites = 1;
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| 111 | engine = new SequentialEngine.SequentialEngine();
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| 112 | CombinedOperator algo = CreateAlgorithm();
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| 113 | engine.OperatorGraph.AddOperator(algo);
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| 114 | engine.OperatorGraph.InitialOperator = algo;
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| 115 | }
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| 116 |
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| 117 | private CombinedOperator CreateAlgorithm() {
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| 118 | CombinedOperator algo = new CombinedOperator();
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| 119 | algo.Name = "StandardGP";
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| 120 | SequentialProcessor seq = new SequentialProcessor();
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| 121 | EmptyOperator problemInjectorPlaceholder = new EmptyOperator();
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| 122 | RandomInjector randomInjector = new RandomInjector();
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| 123 | randomInjector.GetVariable("SetSeedRandomly").Value = setSeedRandomly;
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| 124 | randomInjector.GetVariable("Seed").Value = seed;
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| 125 | randomInjector.Name = "Random Injector";
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| 126 | VariableInjector globalInjector = CreateGlobalInjector();
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| 127 | CombinedOperator initialization = CreateInialization();
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| 128 | initialization.Name = "Initialization";
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| 129 | FunctionLibraryInjector funLibInjector = new FunctionLibraryInjector();
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| 130 | CombinedOperator mainLoop = CreateMainLoop();
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| 131 | mainLoop.Name = "Main loop";
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| 132 |
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| 133 | ProbabilisticTreeCreator treeCreator = new ProbabilisticTreeCreator();
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| 134 | treeCreator.Name = "Tree generator";
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| 135 | treeCreator.GetVariableInfo("OperatorLibrary").ActualName = "FunctionLibrary";
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| 136 | treeCreator.GetVariableInfo("MinTreeSize").Local = true;
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| 137 | treeCreator.AddVariable(new HeuristicLab.Core.Variable("MinTreeSize", new IntData(3)));
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| 138 | MeanSquaredErrorEvaluator evaluator = new MeanSquaredErrorEvaluator();
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| 139 | evaluator.GetVariableInfo("MSE").ActualName = "Quality";
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| 140 | evaluator.GetVariableInfo("SamplesStart").ActualName = "TrainingSamplesStart";
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| 141 | evaluator.GetVariableInfo("SamplesEnd").ActualName = "TrainingSamplesEnd";
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| 142 | evaluator.Name = "Evaluator";
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| 143 | StandardCrossOver crossover = new StandardCrossOver();
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| 144 | crossover.Name = "Crossover";
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| 145 | crossover.GetVariableInfo("OperatorLibrary").ActualName = "FunctionLibrary";
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| 146 | CombinedOperator manipulator = CreateManipulator();
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| 147 | manipulator.Name = "Manipulator";
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| 148 | TournamentSelector selector = new TournamentSelector();
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| 149 | selector.Name = "Selector";
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| 150 | selector.GetVariableInfo("Selected").ActualName = "Parents";
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| 151 | selector.GetVariableInfo("GroupSize").Local = false;
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| 152 | selector.RemoveVariable("GroupSize");
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| 153 | selector.GetVariableInfo("GroupSize").ActualName = "TournamentSize";
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| 154 | LeftReducer cleanUp = new LeftReducer();
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| 155 |
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| 156 | seq.AddSubOperator(problemInjectorPlaceholder);
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| 157 | seq.AddSubOperator(randomInjector);
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| 158 | seq.AddSubOperator(globalInjector);
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| 159 | seq.AddSubOperator(funLibInjector);
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| 160 | seq.AddSubOperator(initialization);
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| 161 | seq.AddSubOperator(mainLoop);
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| 162 | seq.AddSubOperator(cleanUp);
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| 163 |
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| 164 | initialization.AddSubOperator(treeCreator);
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| 165 | initialization.AddSubOperator(evaluator);
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| 166 |
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| 167 | mainLoop.AddSubOperator(selector);
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| 168 | mainLoop.AddSubOperator(crossover);
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| 169 | mainLoop.AddSubOperator(manipulator);
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| 170 | mainLoop.AddSubOperator(evaluator);
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| 171 | algo.OperatorGraph.AddOperator(seq);
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| 172 | algo.OperatorGraph.InitialOperator = seq;
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| 173 | this.algorithm = seq;
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| 174 | return algo;
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| 175 | }
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| 176 |
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| 177 | private VariableInjector CreateGlobalInjector() {
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| 178 | VariableInjector injector = new VariableInjector();
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| 179 | injector.Name = "Global Injector";
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| 180 | injector.AddVariable(new HeuristicLab.Core.Variable("Generations", new IntData(0)));
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| 181 | injector.AddVariable(new HeuristicLab.Core.Variable("MaxGenerations", maxGenerations));
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| 182 | injector.AddVariable(new HeuristicLab.Core.Variable("MutationRate", mutationRate));
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| 183 | injector.AddVariable(new HeuristicLab.Core.Variable("PopulationSize", populationSize));
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| 184 | injector.AddVariable(new HeuristicLab.Core.Variable("Parents", parents));
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| 185 | injector.AddVariable(new HeuristicLab.Core.Variable("Elites", elites));
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| 186 | injector.AddVariable(new HeuristicLab.Core.Variable("TournamentSize", tournamentSize));
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| 187 | injector.AddVariable(new HeuristicLab.Core.Variable("Maximization", new BoolData(false)));
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| 188 | injector.AddVariable(new HeuristicLab.Core.Variable("MaxTreeHeight", new IntData(maxTreeHeight)));
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| 189 | injector.AddVariable(new HeuristicLab.Core.Variable("MaxTreeSize", new IntData(maxTreeSize)));
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| 190 | injector.AddVariable(new HeuristicLab.Core.Variable("EvaluatedSolutions", new IntData(0)));
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| 191 | injector.AddVariable(new HeuristicLab.Core.Variable("TotalEvaluatedNodes", new DoubleData(0)));
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| 192 | injector.AddVariable(new HeuristicLab.Core.Variable("PunishmentFactor", new DoubleData(punishmentFactor)));
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| 193 | injector.AddVariable(new HeuristicLab.Core.Variable("UseEstimatedTargetValue", new BoolData(useEstimatedTargetValue)));
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| 194 | return injector;
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| 195 | }
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| 196 |
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| 197 | private CombinedOperator CreateManipulator() {
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| 198 | CombinedOperator manipulator = new CombinedOperator();
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| 199 | StochasticMultiBranch multibranch = new StochasticMultiBranch();
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| 200 | FullTreeShaker fullTreeShaker = new FullTreeShaker();
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| 201 | fullTreeShaker.GetVariableInfo("OperatorLibrary").ActualName = "FunctionLibrary";
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| 202 | fullTreeShaker.GetVariableInfo("ShakingFactor").Local = true;
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| 203 | fullTreeShaker.AddVariable(new HeuristicLab.Core.Variable("ShakingFactor", new DoubleData(fullTreeShakingFactor)));
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| 204 |
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| 205 | OnePointShaker onepointShaker = new OnePointShaker();
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| 206 | onepointShaker.GetVariableInfo("OperatorLibrary").ActualName = "FunctionLibrary";
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| 207 | onepointShaker.GetVariableInfo("ShakingFactor").Local = true;
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| 208 | onepointShaker.AddVariable(new HeuristicLab.Core.Variable("ShakingFactor", new DoubleData(onepointShakingFactor)));
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| 209 | ChangeNodeTypeManipulation changeNodeTypeManipulation = new ChangeNodeTypeManipulation();
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| 210 | changeNodeTypeManipulation.GetVariableInfo("OperatorLibrary").ActualName = "FunctionLibrary";
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| 211 | CutOutNodeManipulation cutOutNodeManipulation = new CutOutNodeManipulation();
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| 212 | cutOutNodeManipulation.GetVariableInfo("OperatorLibrary").ActualName = "FunctionLibrary";
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| 213 | DeleteSubTreeManipulation deleteSubTreeManipulation = new DeleteSubTreeManipulation();
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| 214 | deleteSubTreeManipulation.GetVariableInfo("OperatorLibrary").ActualName = "FunctionLibrary";
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| 215 | SubstituteSubTreeManipulation substituteSubTreeManipulation = new SubstituteSubTreeManipulation();
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| 216 | substituteSubTreeManipulation.GetVariableInfo("OperatorLibrary").ActualName = "FunctionLibrary";
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| 217 |
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| 218 | IOperator[] manipulators = new IOperator[] {
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| 219 | onepointShaker, fullTreeShaker,
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| 220 | changeNodeTypeManipulation,
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| 221 | cutOutNodeManipulation,
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| 222 | deleteSubTreeManipulation,
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| 223 | substituteSubTreeManipulation};
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| 224 |
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| 225 | DoubleArrayData probabilities = new DoubleArrayData(new double[manipulators.Length]);
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| 226 | for(int i=0;i<manipulators.Length;i++) {
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| 227 | probabilities.Data[i] = 1.0;
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| 228 | multibranch.AddSubOperator(manipulators[i]);
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| 229 | }
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| 230 | multibranch.GetVariableInfo("Probabilities").Local = true;
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| 231 | multibranch.AddVariable(new HeuristicLab.Core.Variable("Probabilities", probabilities));
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| 232 |
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| 233 | manipulator.OperatorGraph.AddOperator(multibranch);
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| 234 | manipulator.OperatorGraph.InitialOperator = multibranch;
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| 235 | return manipulator;
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| 236 | }
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| 237 |
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| 238 | private CombinedOperator CreateInialization() {
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| 239 | CombinedOperator init = new CombinedOperator();
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| 240 | SequentialProcessor seq = new SequentialProcessor();
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| 241 | SubScopesCreater subScopesCreater = new SubScopesCreater();
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| 242 | subScopesCreater.GetVariableInfo("SubScopes").ActualName = "PopulationSize";
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| 243 | UniformSequentialSubScopesProcessor subScopesProc = new UniformSequentialSubScopesProcessor();
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| 244 | SequentialProcessor individualSeq = new SequentialProcessor();
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| 245 | OperatorExtractor treeCreater = new OperatorExtractor();
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| 246 | treeCreater.Name = "Tree generator (extr.)";
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| 247 | treeCreater.GetVariableInfo("Operator").ActualName = "Tree generator";
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| 248 | OperatorExtractor evaluator = new OperatorExtractor();
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| 249 | evaluator.Name = "Evaluator (extr.)";
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| 250 | evaluator.GetVariableInfo("Operator").ActualName = "Evaluator";
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| 251 | MeanSquaredErrorEvaluator validationEvaluator = new MeanSquaredErrorEvaluator();
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| 252 | validationEvaluator.GetVariableInfo("MSE").ActualName = "ValidationQuality";
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| 253 | validationEvaluator.GetVariableInfo("SamplesStart").ActualName = "ValidationSamplesStart";
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| 254 | validationEvaluator.GetVariableInfo("SamplesEnd").ActualName = "ValidationSamplesEnd";
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| 255 | Counter evalCounter = new Counter();
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| 256 | evalCounter.GetVariableInfo("Value").ActualName = "EvaluatedSolutions";
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| 257 |
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| 258 | seq.AddSubOperator(subScopesCreater);
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| 259 | seq.AddSubOperator(subScopesProc);
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| 260 | subScopesProc.AddSubOperator(individualSeq);
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| 261 | individualSeq.AddSubOperator(treeCreater);
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| 262 | individualSeq.AddSubOperator(evaluator);
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| 263 | individualSeq.AddSubOperator(validationEvaluator);
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| 264 | individualSeq.AddSubOperator(evalCounter);
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| 265 |
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| 266 | init.OperatorGraph.AddOperator(seq);
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| 267 | init.OperatorGraph.InitialOperator = seq;
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| 268 | return init;
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| 269 | }
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| 270 |
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| 271 | private CombinedOperator CreateMainLoop() {
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| 272 | CombinedOperator main = new CombinedOperator();
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| 273 | SequentialProcessor seq = new SequentialProcessor();
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| 274 | CombinedOperator childCreater = CreateChildCreater();
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| 275 | childCreater.Name = "Create children";
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| 276 | CombinedOperator replacement = CreateReplacement();
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| 277 | replacement.Name = "Replacement";
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| 278 | BestSolutionStorer solutionStorer = CreateBestSolutionStorer();
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| 279 | BestAverageWorstQualityCalculator qualityCalculator = new BestAverageWorstQualityCalculator();
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| 280 | BestAverageWorstQualityCalculator validationQualityCalculator = new BestAverageWorstQualityCalculator();
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| 281 | validationQualityCalculator.Name = "ValidationQualityCalculator";
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| 282 | validationQualityCalculator.GetVariableInfo("BestQuality").ActualName = "BestValidationQuality";
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| 283 | validationQualityCalculator.GetVariableInfo("AverageQuality").ActualName = "AverageValidationQuality";
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| 284 | validationQualityCalculator.GetVariableInfo("WorstQuality").ActualName = "WorstValidationQuality";
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| 285 | DataCollector collector = new DataCollector();
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| 286 | ItemList<StringData> names = collector.GetVariable("VariableNames").GetValue<ItemList<StringData>>();
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| 287 | names.Add(new StringData("BestQuality"));
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| 288 | names.Add(new StringData("AverageQuality"));
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| 289 | names.Add(new StringData("WorstQuality"));
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| 290 | names.Add(new StringData("BestValidationQuality"));
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| 291 | names.Add(new StringData("AverageValidationQuality"));
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| 292 | names.Add(new StringData("WorstValidationQuality"));
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| 293 | LinechartInjector lineChartInjector = new LinechartInjector();
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| 294 | lineChartInjector.GetVariableInfo("Linechart").ActualName = "Quality Linechart";
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| 295 | lineChartInjector.GetVariable("NumberOfLines").GetValue<IntData>().Data = 6;
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| 296 | QualityLogger qualityLogger = new QualityLogger();
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| 297 | QualityLogger validationQualityLogger = new QualityLogger();
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| 298 | validationQualityCalculator.Name = "ValidationQualityLogger";
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| 299 | validationQualityLogger.GetVariableInfo("Quality").ActualName = "ValidationQuality";
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| 300 | validationQualityLogger.GetVariableInfo("QualityLog").ActualName = "ValidationQualityLog";
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| 301 | Counter counter = new Counter();
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| 302 | counter.GetVariableInfo("Value").ActualName = "Generations";
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| 303 | LessThanComparator comparator = new LessThanComparator();
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| 304 | comparator.GetVariableInfo("LeftSide").ActualName = "Generations";
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| 305 | comparator.GetVariableInfo("RightSide").ActualName = "MaxGenerations";
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| 306 | comparator.GetVariableInfo("Result").ActualName = "GenerationsCondition";
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| 307 | ConditionalBranch cond = new ConditionalBranch();
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| 308 | cond.GetVariableInfo("Condition").ActualName = "GenerationsCondition";
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| 309 |
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| 310 | seq.AddSubOperator(childCreater);
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| 311 | seq.AddSubOperator(replacement);
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| 312 | seq.AddSubOperator(solutionStorer);
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| 313 | seq.AddSubOperator(qualityCalculator);
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| 314 | seq.AddSubOperator(validationQualityCalculator);
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| 315 | seq.AddSubOperator(collector);
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| 316 | seq.AddSubOperator(lineChartInjector);
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| 317 | seq.AddSubOperator(qualityLogger);
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| 318 | seq.AddSubOperator(validationQualityLogger);
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| 319 | seq.AddSubOperator(counter);
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| 320 | seq.AddSubOperator(comparator);
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| 321 | seq.AddSubOperator(cond);
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| 322 | cond.AddSubOperator(seq);
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| 323 |
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| 324 | main.OperatorGraph.AddOperator(seq);
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| 325 | main.OperatorGraph.InitialOperator = seq;
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| 326 | return main;
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| 327 | }
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| 328 |
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| 329 | private BestSolutionStorer CreateBestSolutionStorer() {
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| 330 | BestSolutionStorer solutionStorer = new BestSolutionStorer();
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| 331 | solutionStorer.GetVariableInfo("Quality").ActualName = "ValidationQuality";
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| 332 | solutionStorer.GetVariableInfo("BestSolution").ActualName = "BestValidationSolution";
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| 333 | SequentialProcessor bestSolutionProcessor = new SequentialProcessor();
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| 334 | MeanAbsolutePercentageErrorEvaluator trainingMapeEvaluator = new MeanAbsolutePercentageErrorEvaluator();
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| 335 | trainingMapeEvaluator.Name = "ValidationMapeEvaluator";
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| 336 | trainingMapeEvaluator.GetVariableInfo("MAPE").ActualName = "TrainingMAPE";
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| 337 | trainingMapeEvaluator.GetVariableInfo("SamplesStart").ActualName = "TrainingSamplesStart";
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| 338 | trainingMapeEvaluator.GetVariableInfo("SamplesEnd").ActualName = "TrainingSamplesEnd";
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| 339 | MeanAbsolutePercentageErrorEvaluator validationMapeEvaluator = new MeanAbsolutePercentageErrorEvaluator();
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| 340 | validationMapeEvaluator.Name = "ValidationMapeEvaluator";
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| 341 | validationMapeEvaluator.GetVariableInfo("MAPE").ActualName = "ValidationMAPE";
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| 342 | validationMapeEvaluator.GetVariableInfo("SamplesStart").ActualName = "ValidationSamplesStart";
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| 343 | validationMapeEvaluator.GetVariableInfo("SamplesEnd").ActualName = "ValidationSamplesEnd";
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| 344 | ProgrammableOperator progOperator = new ProgrammableOperator();
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| 345 | progOperator.RemoveVariableInfo("Result");
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| 346 | progOperator.AddVariableInfo(new HeuristicLab.Core.VariableInfo("EvaluatedSolutions", "", typeof(IntData), VariableKind.In));
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| 347 | progOperator.Code = @"
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| 348 | int evalSolutions = EvaluatedSolutions.Data;
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| 349 | scope.AddVariable(new Variable(""EvaluatedSolutions"", new IntData(evalSolutions)));
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| 350 | ";
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| 351 | solutionStorer.AddSubOperator(bestSolutionProcessor);
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| 352 | bestSolutionProcessor.AddSubOperator(trainingMapeEvaluator);
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| 353 | bestSolutionProcessor.AddSubOperator(validationMapeEvaluator);
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| 354 | bestSolutionProcessor.AddSubOperator(progOperator);
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| 355 | return solutionStorer;
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| 356 | }
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| 357 |
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| 358 | private CombinedOperator CreateReplacement() {
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| 359 | CombinedOperator replacement = new CombinedOperator();
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| 360 | SequentialProcessor seq = new SequentialProcessor();
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| 361 | SequentialSubScopesProcessor seqScopeProc = new SequentialSubScopesProcessor();
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| 362 | SequentialProcessor selectedProc = new SequentialProcessor();
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| 363 | LeftSelector leftSelector = new LeftSelector();
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| 364 | leftSelector.GetVariableInfo("Selected").ActualName = "Elites";
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| 365 | RightReducer rightReducer = new RightReducer();
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| 366 |
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| 367 | SequentialProcessor remainingProc = new SequentialProcessor();
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| 368 | RightSelector rightSelector = new RightSelector();
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| 369 | rightSelector.GetVariableInfo("Selected").ActualName = "Elites";
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| 370 | LeftReducer leftReducer = new LeftReducer();
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| 371 | MergingReducer mergingReducer = new MergingReducer();
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| 372 | Sorter sorter = new Sorter();
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| 373 | sorter.GetVariableInfo("Descending").ActualName = "Maximization";
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| 374 | sorter.GetVariableInfo("Value").ActualName = "Quality";
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| 375 |
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| 376 | seq.AddSubOperator(seqScopeProc);
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| 377 | seqScopeProc.AddSubOperator(selectedProc);
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| 378 | selectedProc.AddSubOperator(leftSelector);
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| 379 | selectedProc.AddSubOperator(rightReducer);
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|---|
| 380 |
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|---|
| 381 | seqScopeProc.AddSubOperator(remainingProc);
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|---|
| 382 | remainingProc.AddSubOperator(rightSelector);
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|---|
| 383 | remainingProc.AddSubOperator(leftReducer);
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|---|
| 384 | seq.AddSubOperator(mergingReducer);
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|---|
| 385 | seq.AddSubOperator(sorter);
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|---|
| 386 | replacement.OperatorGraph.AddOperator(seq);
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| 387 | replacement.OperatorGraph.InitialOperator = seq;
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|---|
| 388 | return replacement;
|
|---|
| 389 | }
|
|---|
| 390 |
|
|---|
| 391 | private CombinedOperator CreateChildCreater() {
|
|---|
| 392 | CombinedOperator childCreater = new CombinedOperator();
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|---|
| 393 | SequentialProcessor seq = new SequentialProcessor();
|
|---|
| 394 | OperatorExtractor selector = new OperatorExtractor();
|
|---|
| 395 | selector.Name = "Selector (extr.)";
|
|---|
| 396 | selector.GetVariableInfo("Operator").ActualName = "Selector";
|
|---|
| 397 | SequentialSubScopesProcessor seqScopesProc = new SequentialSubScopesProcessor();
|
|---|
| 398 | EmptyOperator emptyOpt = new EmptyOperator();
|
|---|
| 399 | SequentialProcessor selectedProc = new SequentialProcessor();
|
|---|
| 400 | OperatorExtractor crossover = new OperatorExtractor();
|
|---|
| 401 | crossover.Name = "Crossover (extr.)";
|
|---|
| 402 | crossover.GetVariableInfo("Operator").ActualName = "Crossover";
|
|---|
| 403 | UniformSequentialSubScopesProcessor individualProc = new UniformSequentialSubScopesProcessor();
|
|---|
| 404 | SequentialProcessor individualSeqProc = new SequentialProcessor();
|
|---|
| 405 | StochasticBranch cond = new StochasticBranch();
|
|---|
| 406 | cond.GetVariableInfo("Probability").ActualName = "MutationRate";
|
|---|
| 407 | OperatorExtractor manipulator = new OperatorExtractor();
|
|---|
| 408 | manipulator.Name = "Manipulator (extr.)";
|
|---|
| 409 | manipulator.GetVariableInfo("Operator").ActualName = "Manipulator";
|
|---|
| 410 | OperatorExtractor evaluator = new OperatorExtractor();
|
|---|
| 411 | evaluator.Name = "Evaluator (extr.)";
|
|---|
| 412 | evaluator.GetVariableInfo("Operator").ActualName = "Evaluator";
|
|---|
| 413 | MeanSquaredErrorEvaluator validationEvaluator = new MeanSquaredErrorEvaluator();
|
|---|
| 414 | validationEvaluator.GetVariableInfo("MSE").ActualName = "ValidationQuality";
|
|---|
| 415 | validationEvaluator.GetVariableInfo("SamplesStart").ActualName = "ValidationSamplesStart";
|
|---|
| 416 | validationEvaluator.GetVariableInfo("SamplesEnd").ActualName = "ValidationSamplesEnd";
|
|---|
| 417 | Counter evalCounter = new Counter();
|
|---|
| 418 | evalCounter.GetVariableInfo("Value").ActualName = "EvaluatedSolutions";
|
|---|
| 419 |
|
|---|
| 420 | Sorter sorter = new Sorter();
|
|---|
| 421 | sorter.GetVariableInfo("Descending").ActualName = "Maximization";
|
|---|
| 422 | sorter.GetVariableInfo("Value").ActualName = "Quality";
|
|---|
| 423 |
|
|---|
| 424 |
|
|---|
| 425 | seq.AddSubOperator(selector);
|
|---|
| 426 | seq.AddSubOperator(seqScopesProc);
|
|---|
| 427 | seqScopesProc.AddSubOperator(emptyOpt);
|
|---|
| 428 | seqScopesProc.AddSubOperator(selectedProc);
|
|---|
| 429 | selectedProc.AddSubOperator(crossover);
|
|---|
| 430 | selectedProc.AddSubOperator(individualProc);
|
|---|
| 431 | individualProc.AddSubOperator(individualSeqProc);
|
|---|
| 432 | individualSeqProc.AddSubOperator(cond);
|
|---|
| 433 | cond.AddSubOperator(manipulator);
|
|---|
| 434 | individualSeqProc.AddSubOperator(evaluator);
|
|---|
| 435 | individualSeqProc.AddSubOperator(validationEvaluator);
|
|---|
| 436 | individualSeqProc.AddSubOperator(evalCounter);
|
|---|
| 437 | selectedProc.AddSubOperator(sorter);
|
|---|
| 438 |
|
|---|
| 439 | childCreater.OperatorGraph.AddOperator(seq);
|
|---|
| 440 | childCreater.OperatorGraph.InitialOperator = seq;
|
|---|
| 441 | return childCreater;
|
|---|
| 442 | }
|
|---|
| 443 |
|
|---|
| 444 | public IEditor CreateEditor() {
|
|---|
| 445 | return new StandardGpEditor(this);
|
|---|
| 446 | }
|
|---|
| 447 |
|
|---|
| 448 | public override IView CreateView() {
|
|---|
| 449 | return new StandardGpEditor(this);
|
|---|
| 450 | }
|
|---|
| 451 |
|
|---|
| 452 | public override object Clone(IDictionary<Guid, object> clonedObjects) {
|
|---|
| 453 | StandardGP clone = new StandardGP();
|
|---|
| 454 | clonedObjects.Add(Guid, clone);
|
|---|
| 455 | clone.engine = (SequentialEngine.SequentialEngine)Auxiliary.Clone(Engine, clonedObjects);
|
|---|
| 456 | return clone;
|
|---|
| 457 | }
|
|---|
| 458 | #region SetReferences Method
|
|---|
| 459 | private void SetReferences() {
|
|---|
| 460 | // SGA
|
|---|
| 461 | CombinedOperator co1 = (CombinedOperator)Engine.OperatorGraph.InitialOperator;
|
|---|
| 462 | // SequentialProcessor in SGA
|
|---|
| 463 | algorithm = (SequentialProcessor)co1.OperatorGraph.InitialOperator;
|
|---|
| 464 | // RandomInjector
|
|---|
| 465 | RandomInjector ri = (RandomInjector)algorithm.SubOperators[1];
|
|---|
| 466 | setSeedRandomly = ri.GetVariable("SetSeedRandomly").GetValue<BoolData>();
|
|---|
| 467 | seed = ri.GetVariable("Seed").GetValue<IntData>();
|
|---|
| 468 | // VariableInjector
|
|---|
| 469 | VariableInjector vi = (VariableInjector)algorithm.SubOperators[2];
|
|---|
| 470 | populationSize = vi.GetVariable("PopulationSize").GetValue<IntData>();
|
|---|
| 471 | parents = vi.GetVariable("Parents").GetValue<IntData>();
|
|---|
| 472 | maxGenerations = vi.GetVariable("MaxGenerations").GetValue<IntData>();
|
|---|
| 473 | mutationRate = vi.GetVariable("MutationRate").GetValue<DoubleData>();
|
|---|
| 474 | elites = vi.GetVariable("Elites").GetValue<IntData>();
|
|---|
| 475 | }
|
|---|
| 476 | #endregion
|
|---|
| 477 |
|
|---|
| 478 | #region Persistence Methods
|
|---|
| 479 | public override XmlNode GetXmlNode(string name, XmlDocument document, IDictionary<Guid, IStorable> persistedObjects) {
|
|---|
| 480 | XmlNode node = base.GetXmlNode(name, document, persistedObjects);
|
|---|
| 481 | node.AppendChild(PersistenceManager.Persist("Engine", Engine, document, persistedObjects));
|
|---|
| 482 | return node;
|
|---|
| 483 | }
|
|---|
| 484 | public override void Populate(XmlNode node, IDictionary<Guid, IStorable> restoredObjects) {
|
|---|
| 485 | base.Populate(node, restoredObjects);
|
|---|
| 486 | engine = (SequentialEngine.SequentialEngine)PersistenceManager.Restore(node.SelectSingleNode("Engine"), restoredObjects);
|
|---|
| 487 | SetReferences();
|
|---|
| 488 | }
|
|---|
| 489 | #endregion
|
|---|
| 490 | }
|
|---|
| 491 | }
|
|---|
