#region License Information
/* HeuristicLab
* Copyright (C) 2002-2014 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
*
* This file is part of HeuristicLab.
*
* HeuristicLab is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* HeuristicLab is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with HeuristicLab. If not, see .
*/
#endregion
using System;
using System.Collections.Generic;
using System.Linq;
using HeuristicLab.Analysis;
using HeuristicLab.Common;
using HeuristicLab.Core;
using HeuristicLab.Data;
using HeuristicLab.Operators;
using HeuristicLab.Optimization;
using HeuristicLab.Parameters;
using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
namespace HeuristicLab.Encodings.SymbolicExpressionTreeEncoding {
///
/// An operator that tracks the frequencies of distinct symbols in symbolic expression trees.
///
[Item("SymbolicExpressionSymbolFrequencyAnalyzer", "An operator that tracks frequencies of symbols in symbolic expression trees.")]
[StorableClass]
public class SymbolicExpressionSymbolFrequencyAnalyzer : SingleSuccessorOperator, ISymbolicExpressionTreeAnalyzer {
private const string SymbolicExpressionTreeParameterName = "SymbolicExpressionTree";
private const string ResultsParameterName = "Results";
private const string SymbolFrequenciesParameterName = "SymbolFrequencies";
private const string AggregateSymbolsWithDifferentSubtreeCountParameterName = "AggregateSymbolsWithDifferentSubtreeCount";
#region parameter properties
public IScopeTreeLookupParameter SymbolicExpressionTreeParameter {
get { return (IScopeTreeLookupParameter)Parameters[SymbolicExpressionTreeParameterName]; }
}
public ILookupParameter SymbolFrequenciesParameter {
get { return (ILookupParameter)Parameters[SymbolFrequenciesParameterName]; }
}
public ILookupParameter ResultsParameter {
get { return (ILookupParameter)Parameters[ResultsParameterName]; }
}
public IValueParameter AggregateSymbolsWithDifferentSubtreeCountParameter {
get { return (IValueParameter)Parameters[AggregateSymbolsWithDifferentSubtreeCountParameterName]; }
}
#endregion
#region properties
public virtual bool EnabledByDefault {
get { return true; }
}
public BoolValue AggregrateSymbolsWithDifferentSubtreeCount {
get { return AggregateSymbolsWithDifferentSubtreeCountParameter.Value; }
set { AggregateSymbolsWithDifferentSubtreeCountParameter.Value = value; }
}
#endregion
[StorableConstructor]
protected SymbolicExpressionSymbolFrequencyAnalyzer(bool deserializing) : base(deserializing) { }
protected SymbolicExpressionSymbolFrequencyAnalyzer(SymbolicExpressionSymbolFrequencyAnalyzer original, Cloner cloner) : base(original, cloner) { }
public SymbolicExpressionSymbolFrequencyAnalyzer()
: base() {
Parameters.Add(new ScopeTreeLookupParameter(SymbolicExpressionTreeParameterName, "The symbolic expression trees to analyze."));
Parameters.Add(new LookupParameter(SymbolFrequenciesParameterName, "The data table to store the symbol frequencies."));
Parameters.Add(new LookupParameter(ResultsParameterName, "The result collection where the symbol frequencies should be stored."));
Parameters.Add(new ValueParameter(AggregateSymbolsWithDifferentSubtreeCountParameterName, "Flag that indicates if the frequencies of symbols with the same name but different number of sub-trees should be aggregated.", new BoolValue(true)));
}
public override IDeepCloneable Clone(Cloner cloner) {
return new SymbolicExpressionSymbolFrequencyAnalyzer(this, cloner);
}
[StorableHook(HookType.AfterDeserialization)]
private void AfterDeserialization() {
#region remove with HL 3.4
if (!Parameters.ContainsKey(AggregateSymbolsWithDifferentSubtreeCountParameterName))
Parameters.Add(new ValueParameter(AggregateSymbolsWithDifferentSubtreeCountParameterName, "Flag that indicates if the frequencies of symbols with the same name but different number of sub-trees should be aggregated.", new BoolValue(true)));
#endregion
}
public override IOperation Apply() {
ItemArray expressions = SymbolicExpressionTreeParameter.ActualValue;
ResultCollection results = ResultsParameter.ActualValue;
DataTable symbolFrequencies = SymbolFrequenciesParameter.ActualValue;
if (symbolFrequencies == null) {
symbolFrequencies = new DataTable("Symbol frequencies", "Relative frequency of symbols aggregated over the whole population.");
symbolFrequencies.VisualProperties.YAxisTitle = "Relative Symbol Frequency";
SymbolFrequenciesParameter.ActualValue = symbolFrequencies;
results.Add(new Result("Symbol frequencies", symbolFrequencies));
}
// all rows must have the same number of values so we can just take the first
int numberOfValues = symbolFrequencies.Rows.Select(r => r.Values.Count).DefaultIfEmpty().First();
foreach (var pair in SymbolicExpressionSymbolFrequencyAnalyzer.CalculateSymbolFrequencies(expressions, AggregrateSymbolsWithDifferentSubtreeCount.Value)) {
if (!symbolFrequencies.Rows.ContainsKey(pair.Key)) {
// initialize a new row for the symbol and pad with zeros
DataRow row = new DataRow(pair.Key, "", Enumerable.Repeat(0.0, numberOfValues));
row.VisualProperties.StartIndexZero = true;
symbolFrequencies.Rows.Add(row);
}
symbolFrequencies.Rows[pair.Key].Values.Add(Math.Round(pair.Value, 3));
}
// add a zero for each data row that was not modified in the previous loop
foreach (var row in symbolFrequencies.Rows.Where(r => r.Values.Count != numberOfValues + 1))
row.Values.Add(0.0);
return base.Apply();
}
public static IEnumerable> CalculateSymbolFrequencies(IEnumerable trees, bool aggregateDifferentNumberOfSubtrees = true) {
Dictionary symbolFrequencies = new Dictionary();
int totalNumberOfSymbols = 0;
foreach (var tree in trees) {
foreach (var node in tree.IterateNodesPrefix()) {
string symbolName;
if (aggregateDifferentNumberOfSubtrees) symbolName = node.Symbol.Name;
else symbolName = node.Symbol.Name + "-" + node.SubtreeCount;
if (symbolFrequencies.ContainsKey(symbolName)) symbolFrequencies[symbolName] += 1;
else symbolFrequencies.Add(symbolName, 1);
totalNumberOfSymbols++;
}
}
foreach (var pair in symbolFrequencies)
yield return new KeyValuePair(pair.Key, pair.Value / totalNumberOfSymbols);
}
}
}