#region License Information
/* HeuristicLab
* Copyright (C) 2002-2018 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
*
* This file is part of HeuristicLab.
*
* HeuristicLab is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* HeuristicLab is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with HeuristicLab. If not, see .
*/
#endregion
using System;
using System.Collections;
using System.Collections.Generic;
using System.Collections.ObjectModel;
using System.Linq;
using HeuristicLab.Common;
using HeuristicLab.Core;
using HeuristicLab.Data;
using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
namespace HeuristicLab.Problems.DataAnalysis {
[Item("Dataset", "Represents a dataset containing data that should be analyzed.")]
[StorableClass]
public class Dataset : NamedItem, IDataset {
[StorableConstructor]
protected Dataset(bool deserializing) : base(deserializing) { }
protected Dataset(Dataset original, Cloner cloner)
: base(original, cloner) {
// no need to clone the variable values because these can't be modified
variableValues = new Dictionary(original.variableValues);
variableNames = new List(original.variableNames);
rows = original.rows;
}
public override IDeepCloneable Clone(Cloner cloner) { return new Dataset(this, cloner); }
public Dataset()
: base() {
Name = "-";
VariableNames = Enumerable.Empty();
variableValues = new Dictionary();
rows = 0;
}
///
/// Creates a new dataset. The variableValues are not cloned.
///
/// The names of the variables in the dataset
/// The values for the variables (column-oriented storage). Values are not cloned!
public Dataset(IEnumerable variableNames, IEnumerable variableValues)
: this(variableNames, variableValues, cloneValues: true) {
}
protected Dataset(IEnumerable variableNames, IEnumerable variableValues, bool cloneValues = false) {
Name = "-";
if (variableNames.Any()) {
this.variableNames = new List(variableNames);
} else {
this.variableNames = Enumerable.Range(0, variableValues.Count()).Select(x => "Column " + x).ToList();
}
// check if the arguments are consistent (no duplicate variables, same number of rows, correct data types, ...)
CheckArguments(this.variableNames, variableValues);
rows = variableValues.First().Count;
if (cloneValues) {
this.variableValues = CloneValues(this.variableNames, variableValues);
} else {
this.variableValues = new Dictionary(this.variableNames.Count);
for (int i = 0; i < this.variableNames.Count; i++) {
var variableName = this.variableNames[i];
var values = variableValues.ElementAt(i);
this.variableValues.Add(variableName, values);
}
}
}
public Dataset(IEnumerable variableNames, double[,] variableValues) {
Name = "-";
if (variableNames.Count() != variableValues.GetLength(1)) {
throw new ArgumentException("Number of variable names doesn't match the number of columns of variableValues");
}
if (variableNames.Distinct().Count() != variableNames.Count()) {
var duplicateVariableNames = variableNames.GroupBy(v => v).Where(g => g.Count() > 1).Select(g => g.Key).ToList();
string message = "The dataset cannot contain duplicate variables names: " + Environment.NewLine;
foreach (var duplicateVariableName in duplicateVariableNames)
message += duplicateVariableName + Environment.NewLine;
throw new ArgumentException(message);
}
rows = variableValues.GetLength(0);
this.variableNames = new List(variableNames);
this.variableValues = new Dictionary(variableValues.GetLength(1));
for (int col = 0; col < variableValues.GetLength(1); col++) {
string columName = this.variableNames[col];
var values = new List(variableValues.GetLength(0));
for (int row = 0; row < variableValues.GetLength(0); row++) {
values.Add(variableValues[row, col]);
}
this.variableValues.Add(columName, values);
}
}
public ModifiableDataset ToModifiable() {
return new ModifiableDataset(variableNames, variableNames.Select(v => variableValues[v]),true);
}
///
/// Shuffle a dataset's rows
///
/// Random number generator used for shuffling.
/// A shuffled copy of the current dataset.
public Dataset Shuffle(IRandom random) {
var values = variableNames.Select(x => variableValues[x]).ToList();
return new Dataset(variableNames, values.ShuffleLists(random));
}
#region Backwards compatible code, remove with 3.5
private double[,] storableData;
//name alias used to suppport backwards compatibility
[Storable(Name = "data", AllowOneWay = true)]
private double[,] StorableData { set { storableData = value; } }
[StorableHook(HookType.AfterDeserialization)]
private void AfterDeserialization() {
if (variableValues == null) {
rows = storableData.GetLength(0);
variableValues = new Dictionary();
for (int col = 0; col < storableData.GetLength(1); col++) {
string columName = variableNames[col];
var values = new List(rows);
for (int row = 0; row < rows; row++) {
values.Add(storableData[row, col]);
}
variableValues.Add(columName, values);
}
storableData = null;
}
}
#endregion
[Storable(Name = "VariableValues")]
protected Dictionary variableValues;
protected List variableNames;
[Storable]
public IEnumerable VariableNames {
get { return variableNames; }
protected set {
if (variableNames != null) throw new InvalidOperationException();
variableNames = new List(value);
}
}
public IEnumerable DoubleVariables {
get { return variableValues.Where(p => p.Value is IList).Select(p => p.Key); }
}
public IEnumerable StringVariables {
get { return variableValues.Where(p => p.Value is IList).Select(p => p.Key); }
}
public IEnumerable DateTimeVariables {
get { return variableValues.Where(p => p.Value is IList).Select(p => p.Key); }
}
public IEnumerable GetDoubleValues(string variableName) {
return GetValues(variableName);
}
public IEnumerable GetStringValues(string variableName) {
return GetValues(variableName);
}
public IEnumerable GetDateTimeValues(string variableName) {
return GetValues(variableName);
}
public ReadOnlyCollection GetReadOnlyDoubleValues(string variableName) {
var values = GetValues(variableName);
return new ReadOnlyCollection(values);
}
public double GetDoubleValue(string variableName, int row) {
var values = GetValues(variableName);
return values[row];
}
public IEnumerable GetDoubleValues(string variableName, IEnumerable rows) {
return GetValues(variableName, rows);
}
public string GetStringValue(string variableName, int row) {
var values = GetValues(variableName);
return values[row];
}
public IEnumerable GetStringValues(string variableName, IEnumerable rows) {
return GetValues(variableName, rows);
}
public ReadOnlyCollection GetReadOnlyStringValues(string variableName) {
var values = GetValues(variableName);
return new ReadOnlyCollection(values);
}
public DateTime GetDateTimeValue(string variableName, int row) {
var values = GetValues(variableName);
return values[row];
}
public IEnumerable GetDateTimeValues(string variableName, IEnumerable rows) {
return GetValues(variableName, rows);
}
public ReadOnlyCollection GetReadOnlyDateTimeValues(string variableName) {
var values = GetValues(variableName);
return new ReadOnlyCollection(values);
}
private IEnumerable GetValues(string variableName, IEnumerable rows) {
var values = GetValues(variableName);
return rows.Select(x => values[x]);
}
private IList GetValues(string variableName) {
IList list;
if (!variableValues.TryGetValue(variableName, out list))
throw new ArgumentException("The variable " + variableName + " does not exist in the dataset.");
IList values = list as IList;
if (values == null) throw new ArgumentException("The variable " + variableName + " is not a " + typeof(T) + " variable.");
return values;
}
public bool VariableHasType(string variableName) {
return variableValues[variableName] is IList;
}
protected Type GetVariableType(string variableName) {
IList list;
variableValues.TryGetValue(variableName, out list);
if (list == null)
throw new ArgumentException("The variable " + variableName + " does not exist in the dataset.");
return GetElementType(list);
}
protected static Type GetElementType(IList list) {
var type = list.GetType();
return type.IsGenericType ? type.GetGenericArguments()[0] : type.GetElementType();
}
protected static bool IsAllowedType(IList list) {
var type = GetElementType(list);
return IsAllowedType(type);
}
protected static bool IsAllowedType(Type type) {
return type == typeof(double) || type == typeof(string) || type == typeof(DateTime);
}
protected static void CheckArguments(IEnumerable variableNames, IEnumerable variableValues) {
if (variableNames.Count() != variableValues.Count()) {
throw new ArgumentException("Number of variable names doesn't match the number of columns of variableValues");
} else if (!variableValues.All(list => list.Count == variableValues.First().Count)) {
throw new ArgumentException("The number of values must be equal for every variable");
} else if (variableNames.Distinct().Count() != variableNames.Count()) {
var duplicateVariableNames =
variableNames.GroupBy(v => v).Where(g => g.Count() > 1).Select(g => g.Key).ToList();
string message = "The dataset cannot contain duplicate variables names: " + Environment.NewLine;
foreach (var duplicateVariableName in duplicateVariableNames)
message += duplicateVariableName + Environment.NewLine;
throw new ArgumentException(message);
}
// check if all the variables are supported
foreach (var t in variableNames.Zip(variableValues, Tuple.Create)) {
var variableName = t.Item1;
var values = t.Item2;
if (!IsAllowedType(values)) {
throw new ArgumentException(string.Format("Unsupported type {0} for variable {1}.", GetElementType(values), variableName));
}
}
}
protected static Dictionary CloneValues(Dictionary variableValues) {
return variableValues.ToDictionary(x => x.Key, x => CloneValues(x.Value));
}
protected static Dictionary CloneValues(IEnumerable variableNames, IEnumerable variableValues) {
return variableNames.Zip(variableValues, Tuple.Create).ToDictionary(x => x.Item1, x => CloneValues(x.Item2));
}
protected static IList CloneValues(IList values) {
var doubleValues = values as IList;
if (doubleValues != null) return new List(doubleValues);
var stringValues = values as IList;
if (stringValues != null) return new List(stringValues);
var dateTimeValues = values as IList;
if (dateTimeValues != null) return new List(dateTimeValues);
throw new ArgumentException(string.Format("Unsupported variable type {0}.", GetElementType(values)));
}
#region IStringConvertibleMatrix Members
[Storable]
private int rows;
public int Rows {
get { return rows; }
protected set { rows = value; }
}
int IStringConvertibleMatrix.Rows {
get { return Rows; }
set { throw new NotSupportedException(); }
}
public int Columns {
get { return variableNames.Count; }
}
int IStringConvertibleMatrix.Columns {
get { return Columns; }
set { throw new NotSupportedException(); }
}
bool IStringConvertibleMatrix.SortableView {
get { return false; }
set { throw new NotSupportedException(); }
}
bool IStringConvertibleMatrix.ReadOnly {
get { return true; }
}
IEnumerable IStringConvertibleMatrix.ColumnNames {
get { return this.VariableNames; }
set { throw new NotSupportedException(); }
}
IEnumerable IStringConvertibleMatrix.RowNames {
get { return Enumerable.Empty(); }
set { throw new NotSupportedException(); }
}
string IStringConvertibleMatrix.GetValue(int rowIndex, int columnIndex) {
return variableValues[variableNames[columnIndex]][rowIndex].ToString();
}
bool IStringConvertibleMatrix.SetValue(string value, int rowIndex, int columnIndex) {
throw new NotSupportedException();
}
bool IStringConvertibleMatrix.Validate(string value, out string errorMessage) {
throw new NotSupportedException();
}
public virtual event EventHandler ColumnsChanged { add { } remove { } }
public virtual event EventHandler RowsChanged { add { } remove { } }
public virtual event EventHandler ColumnNamesChanged { add { } remove { } }
public virtual event EventHandler RowNamesChanged { add { } remove { } }
public virtual event EventHandler SortableViewChanged { add { } remove { } }
public virtual event EventHandler> ItemChanged { add { } remove { } }
public virtual event EventHandler Reset { add { } remove { } }
#endregion
}
}