package problems import ( "bufio" "bytes" "fmt" "math" "math/rand" "os" "C" "unsafe" ) type Point struct { indep []float64 depnd []float64 } func (d *Point) NumIndep() int { return len(d.indep) } func (d *Point) SetNumIndep(sz int) { d.indep = make([]float64, sz) } func (d *Point) Indep(p int) float64 { return d.indep[p] } func (d *Point) SetIndep(p int, v float64) { d.indep[p] = v } func (d *Point) Indeps() []float64 { return d.indep } func (d *Point) SetIndeps(v []float64) { d.indep = v } func (d *Point) NumDepnd() int { return len(d.depnd) } func (d *Point) SetNumDepnd(sz int) { d.depnd = make([]float64, sz) } func (d *Point) Depnd(p int) float64 { return d.depnd[p] } func (d *Point) SetDepnd(p int, v float64) { d.depnd[p] = v } func (d *Point) Depnds() []float64 { return d.depnd } func (d *Point) SetDepnds(v []float64) { d.depnd = v } type PointSet struct { filename string id int numDim int indepNames []string depndNames []string sysNames []string dataPoints []Point sysVals []float64 } func (d *PointSet) FN() string { return d.filename } func (d *PointSet) SetFN(fn string) { d.filename = fn } func (d *PointSet) ID() int { return d.id } func (d *PointSet) SetID(id int) { d.id = id } func (d *PointSet) SetNumPoints(cnt int) { d.dataPoints = make([]Point, cnt) } func (d *PointSet) NumIndep() int { return len(d.indepNames) } func (d *PointSet) NumDepnd() int { return len(d.depndNames) } func (d *PointSet) NumDim() int { return d.numDim } // TODO check to see if TIME is a variable func (d *PointSet) SetNumDim(dim int) { d.numDim = dim } // TODO check to see if TIME is a variable func (d *PointSet) NumSys() int { return len(d.sysNames) } func (d *PointSet) NumPoints() int { return len(d.dataPoints) } func (d *PointSet) IndepName(xi int) string { return d.indepNames[xi] } func (d *PointSet) GetIndepNames() []string { return d.indepNames } func (d *PointSet) SetIndepNames(names []string) { d.indepNames = names } func (d *PointSet) DepndName(xi int) string { return d.depndNames[xi] } func (d *PointSet) GetDepndNames() []string { return d.depndNames } func (d *PointSet) SetDepndNames(names []string) { d.depndNames = names } func (d *PointSet) SysName(si int) string { return d.sysNames[si] } func (d *PointSet) GetSysNames() []string { return d.sysNames } func (d *PointSet) SetSysNames(names []string) { d.sysNames = names } func (d *PointSet) SetSysVals(sv []float64) { d.sysVals = sv } func (d *PointSet) Point(p int) *Point { return &(d.dataPoints[p]) } func (d *PointSet) Points() []Point { return d.dataPoints } func (d *PointSet) SetPoints(pts []Point) { d.dataPoints = pts } func (d *PointSet) SysVal(p int) float64 { return d.sysVals[p] } func (d *PointSet) SysVals() []float64 { return d.sysVals } // read function at end of file [ func (d *PointSet) Read(filename string) ] type PntSubset struct { ds *PointSet index []int input []Point output []Point sysVals []float64 } func (s *PntSubset) ID() int { return s.ds.id } func (s *PntSubset) DS() *PointSet { return s.ds } func (s *PntSubset) SetDS(ds *PointSet) { s.ds = ds } func (s *PntSubset) NumIndep() int { return s.ds.NumIndep() } func (s *PntSubset) NumDepnd() int { return s.ds.NumDepnd() } func (s *PntSubset) NumSys() int { return s.ds.NumSys() } func (s *PntSubset) NumPoints() int { return len(s.index) } func (s *PntSubset) SysVals() []float64 { return s.sysVals } func (s *PntSubset) SetSysVals(svls []float64) { s.sysVals = svls } func (s *PntSubset) Index(p int) int { return s.index[p] } func (s *PntSubset) Indexes() []int { return s.index } func (s *PntSubset) SetIndexes(idxs []int) { s.index = idxs } func (s *PntSubset) Input(p int) *Point { return &s.input[p] } func (s *PntSubset) Output(p int) *Point { return &s.output[p] } func (s *PntSubset) AddPoint(p int, input, output *Point) { s.index = append(s.index, p) s.input = append(s.input, *input) s.output = append(s.output, *output) } // using indexes, update the input/output data func (s *PntSubset) Refresh() { L := len(s.index) if s.input == nil { s.input = make([]Point, L) } if s.output == nil { s.output = make([]Point, L) } for i := 0; i < L; i++ { s.input[i] = *s.ds.Point(s.index[i]) if s.index[i]+1 >= s.ds.NumPoints() { continue } s.output[i] = *s.ds.Point(s.index[i] + 1) } } func (trainData *PointSet) InitTrainDataF(indepNames []string, depndNames []string, matrix unsafe.Pointer, nEntries int) { trainData.ReadPointSet("C:/Users/Hansi/Desktop/Data.trn") } func (trainData *PointSet) InitTestDataF(indepNames []string, depndNames []string, matrix unsafe.Pointer, nEntries int) { trainData.ReadPointSet("C:/Users/Hansi/Desktop/Data.tst") } func (trainData *PointSet) InitTrainData(indepNames []string, depndNames []string, matrix unsafe.Pointer, nEntries int) { trainData.indepNames = indepNames //First line in .trn file trainData.numDim = len(trainData.indepNames) trainData.depndNames = depndNames //Second line in .trn file fmt.Printf("Var Names = %v | %v\n", trainData.depndNames, trainData.indepNames) var nClum int = len(indepNames) + len(depndNames) for i := 0; i < nEntries; i++ { var pnt Point for j := 0; j < len(trainData.indepNames); j++ { elemNr := i * nClum + j item := (*float64) (unsafe.Pointer( uintptr(unsafe.Pointer(matrix)) + unsafe.Sizeof(float64(0)) * uintptr(elemNr) )) pnt.indep = append(pnt.indep, *item) if os.Getenv("PGEDEBUG") == "1" { fmt.Printf("Adding independend Test/Train Data (%v,%v): %v\n", i, j, *item) } } for j := len(trainData.indepNames); j < (len(trainData.indepNames) + len(trainData.depndNames)); j++ { elemNr := i * nClum + j item := (*float64) (unsafe.Pointer( uintptr(unsafe.Pointer(matrix)) + unsafe.Sizeof(float64(0)) * uintptr(elemNr) )) pnt.depnd = append(pnt.depnd, *item ) if os.Getenv("PGEDEBUG") == "1" { fmt.Printf("Adding dependend (right side) Test/Train Data (%v, %v): %v\n", i, j, *item) } } if len(pnt.indep) > 0 { trainData.dataPoints = append(trainData.dataPoints, pnt) } } fmt.Printf("Num Points: %v\n", len(trainData.dataPoints)) //if os.Getenv("PGEDEBUG") == "2" { // DebugPrint(trainData) //} } //func (trainData *PointSet) DebugPrint() { // for index, elem in range //} func (d *PointSet) ReadPointSet(filename string) { ftotal, err := os.OpenFile(filename, os.O_RDONLY, 0) if err != nil { fmt.Printf("err: %v\n", err) return } defer ftotal.Close() file := bufio.NewReader(ftotal) var word string // get independent variables (x_i...) for i := 0; ; i++ { _, err := fmt.Fscanf(file, "%s", &word) if err != nil { break } d.indepNames = append(d.indepNames, word) } d.numDim = len(d.indepNames) // get dependent variables (y_j...) for i := 0; ; i++ { _, err := fmt.Fscanf(file, "%s", &word) if err != nil { break } d.depndNames = append(d.depndNames, word) } fmt.Printf("Var Names = %v | %v\n", d.depndNames, d.indepNames) for i := 0; ; i++ { var pnt Point var dval, ival float64 if err != nil { break } for j := 0; j < len(d.indepNames); j++ { _, err = fmt.Fscanf(file, "%f", &ival) if err != nil { break } pnt.indep = append(pnt.indep, ival) } for j := 0; j < len(d.depndNames); j++ { _, err = fmt.Fscanf(file, "%f\n", &dval) if err != nil { break } pnt.depnd = append(pnt.depnd, dval) } if len(pnt.indep) > 0 { d.dataPoints = append(d.dataPoints, pnt) } if i%100 == 0 { fmt.Println("Point(%d): %v\n", i, pnt) } } fmt.Printf("Num Points: %v\n", len(d.dataPoints)) } func ReadBytesPointSet(ftotal []byte) (d *PointSet) { d = new(PointSet) // ftotal, err := os.OpenFile(filename, os.O_RDONLY, 0) // if err != nil { // fmt.Printf("err: %v\n", err) // return // } // defer ftotal.Close() var err error file := bytes.NewReader(ftotal) var word string // get independent variables (x_i...) for i := 0; ; i++ { _, err := fmt.Fscanf(file, "%s", &word) if err != nil { break } d.indepNames = append(d.indepNames, word) } d.numDim = len(d.indepNames) // get dependent variables (y_j...) for i := 0; ; i++ { _, err := fmt.Fscanf(file, "%s", &word) if err != nil { break } d.depndNames = append(d.depndNames, word) } fmt.Printf("Var Names = %v | %v\n", d.depndNames, d.indepNames) for i := 0; ; i++ { var pnt Point var dval, ival float64 if err != nil { break } for j := 0; j < len(d.indepNames); j++ { _, err = fmt.Fscanf(file, "%f", &ival) if err != nil { break } pnt.indep = append(pnt.indep, ival) } for j := 0; j < len(d.depndNames); j++ { _, err = fmt.Fscanf(file, "%f\n", &dval) if err != nil { break } pnt.depnd = append(pnt.depnd, dval) } if len(pnt.indep) > 0 { d.dataPoints = append(d.dataPoints, pnt) } if i%100 == 0 { fmt.Println("Point(%d): %v\n", i, pnt) } } fmt.Printf("Num Points: %v\n", len(d.dataPoints)) return d } func (d *PointSet) WritePointSet(filename string) { fmt.Printf("Writing file: %s\n", filename) ftotal, err := os.Create(filename) if err != nil { fmt.Printf("Error creating file: %s %v\n", filename, err) return } defer ftotal.Close() file := bufio.NewWriter(ftotal) defer file.Flush() // write independent variable names (x_i...) for i := 0; i < d.NumIndep(); i++ { if err != nil { fmt.Errorf("error writing pointset to file: %v\n", err) break } } fmt.Fprintln(file) // trite dependent variable names (y_j...) for i := 0; i < d.NumDepnd(); i++ { if err != nil { break } } fmt.Fprintln(file) // write points points := d.Points() for i := 0; i < d.NumPoints(); i++ { indep := points[i].Indeps() depnd := points[i].Depnds() for j := 0; j < len(indep); j++ { if err != nil { break } } for j := 0; j < len(depnd); j++ { if err != nil { break } } fmt.Fprintln(file) } } func SplitPointSetTrainTest(pnts *PointSet, pcnt_train float64, seed int) (train, test *PointSet) { train = new(PointSet) test = new(PointSet) train.filename, test.filename = pnts.filename, pnts.filename train.id, test.id = pnts.id, pnts.id train.indepNames, test.indepNames = pnts.indepNames, pnts.indepNames train.depndNames, test.depndNames = pnts.depndNames, pnts.depndNames train.sysNames, test.sysNames = pnts.sysNames, pnts.sysNames train.sysVals, test.sysVals = pnts.sysVals, pnts.sysVals L := len(pnts.dataPoints) Tst := int(float64(L) * (1.0 - pcnt_train)) tmp := make([]Point, L) copy(tmp, pnts.dataPoints) rand.Seed(int64(seed)) for i := 0; i < Tst; i++ { p := rand.Intn(L - i) tmp[i], tmp[p] = tmp[p], tmp[i] } test.dataPoints = tmp[:Tst] train.dataPoints = tmp[Tst:] return } func (d *PointSet) ReadLakeFile(filename string) { ftotal, err := os.OpenFile(filename, os.O_RDONLY, 0) if err != nil { fmt.Printf("err: %v\n", err) return } defer ftotal.Close() file := bufio.NewReader(ftotal) var word string // get independent variables (x_i...) for i := 0; ; i++ { _, err := fmt.Fscanf(file, "%s", &word) if err != nil { break } d.indepNames = append(d.indepNames, word) } d.numDim = len(d.indepNames) // // get dependent variables (y_j...) // for i := 0; ; i++ { // _, err := fmt.Fscanf(file, "%s", &word) // if err != nil { // break // } // d.depndNames = append(d.depndNames, word) // } // remove time names from indepNames d.indepNames = d.indepNames[2:] // fmt.Printf("Var Names = %v | %v\n", d.depndNames, d.indepNames) for i := 0; ; i++ { var pnt Point var ival float64 if err != nil { break } // read time values and disgaurd var dummy string for j := 0; j < 2; j++ { _, err = fmt.Fscanf(file, "%s", &dummy) // fmt.Println(i, dummy) if err != nil { // fmt.Println("err:", err) break } } // append dummy time value pnt.indep = append(pnt.indep, -0.1) // read real data for j := 0; j < len(d.indepNames); j++ { _, err = fmt.Fscanf(file, "%f\n", &ival) if err != nil { // fmt.Println("err:", err) break } // hack for PAR // if j == 1 { // ival /= 2000.0 * (math.Pi / 2.0) // } pnt.indep = append(pnt.indep, ival) } // fmt.Println(i, pnt) // for j := 0; j < len(d.depndNames); j++ { // _, err = fmt.Fscanf(file, "%f\n", &dval) // if err != nil { // break // } // pnt.depnd = append(pnt.depnd, dval) // } if len(pnt.indep) > 1 { for p := 0; p < len(pnt.indep); p++ { if math.IsNaN(pnt.indep[p]) { // fmt.Println("NaN @ ", i, p) goto skip } } d.dataPoints = append(d.dataPoints, pnt) } skip: } // calculate numerical derivatives calcDerivs(d.dataPoints) for i := 0; i < len(d.dataPoints); i++ { p := d.dataPoints[i] if len(p.Indeps()) == 0 || len(p.Depnds()) == 0 { fmt.Println("Bad Point @", i) } // if i%100 == 0 { // fmt.Printf("Point(%d): %v\n", i, d.dataPoints[i]) // } } // fmt.Printf("Num Points: %v\n", len(d.dataPoints)) } /* Calculate the first derivative of four points with: h = 0.25 * (from: http://www.trentfguidry.net/post/2010/09/04/Numerical-differentiation-formulas.aspx) * * xF0 = ( -3.0*xF4 + 16.0*xF3 - 36.0*xF2 + 48.0*xF1 - 25.0*xF0) / (12.0*h) * xF1 = ( xF4 - 6.0-xF3 + 18.0*xF2 - 10.0*xF1 - 3.0*xF0) / (12.0*h) * xF2 = ( -xF4 + 8.0*xF3 - 8.0*xF1 + xF0) / (12.0*h) * xF3 = ( 3.0*xF4 + 10.0*xF3 - 18.0*xF2 + 6.0*xF1 - xF0) / (12.0*h) * xF4 = ( 25.0*xF4 - 48.0*xF3 + 36.0*xF2 - 16.0*xF1 + 3.0*xF0) / (12.0*h) */ func calcDerivs(pts []Point) { h := 24.0 // / (24.0 * 60.0) NP := len(pts) ND := pts[0].NumIndep() // for summing and averaging on a point/variable~wise basis cnts := make([][]int, NP) vals := make([][]float64, NP) for p := 0; p < NP; p++ { cnts[p] = make([]int, ND) vals[p] = make([]float64, ND) } for p := 0; p < NP-5; p++ { for i := 0; i < ND; i++ { var F [5]float64 var dF [5]float64 for j := 0; j < 5; j++ { F[j] = pts[p+j].Indep(i) } dF[0] = (-3.0*F[4] + 16.0*F[3] - 36.0*F[2] + 48.0*F[1] - 25.0*F[0]) / (12.0 * h) dF[1] = (F[4] - 6.0 - F[3] + 18.0*F[2] - 10.0*F[1] - 3.0*F[0]) / (12.0 * h) dF[2] = (-F[4] + 8.0*F[3] - 8.0*F[1] + F[0]) / (12.0 * h) dF[3] = (3.0*F[4] + 10.0*F[3] - 18.0*F[2] + 6.0*F[1] - F[0]) / (12.0 * h) dF[4] = (25.0*F[4] - 48.0*F[3] + 36.0*F[2] - 16.0*F[1] + 3.0*F[0]) / (12.0 * h) for j := 0; j < 5; j++ { vals[p+j][i] += dF[j] cnts[p+j][i]++ } } } for p := 0; p < NP; p++ { depnds := make([]float64, ND) for i := 0; i < ND; i++ { depnds[i] = vals[p][i] / float64(cnts[p][i]) } pts[p].SetDepnds(depnds) } }