1 | #region License Information
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2 | /* HeuristicLab
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3 | * Copyright (C) 2002-2018 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
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4 | *
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5 | * This file is part of HeuristicLab.
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6 | *
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7 | * HeuristicLab is free software: you can redistribute it and/or modify
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8 | * it under the terms of the GNU General Public License as published by
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9 | * the Free Software Foundation, either version 3 of the License, or
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10 | * (at your option) any later version.
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11 | *
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12 | * HeuristicLab is distributed in the hope that it will be useful,
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13 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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14 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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15 | * GNU General Public License for more details.
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16 | *
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17 | * You should have received a copy of the GNU General Public License
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18 | * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
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19 | */
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20 | #endregion
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21 |
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22 | using System.Linq;
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23 | using HeuristicLab.Common;
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24 | using HeuristicLab.Core;
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25 | using HeuristicLab.Data;
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26 | using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
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27 | using HeuristicLab.Parameters;
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28 | using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
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29 | using HeuristicLab.Problems.DataAnalysis;
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30 | using HeuristicLab.Problems.DataAnalysis.Symbolic;
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31 | using HeuristicLab.Problems.DataAnalysis.Symbolic.Regression;
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32 | using HeuristicLab.Random;
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33 |
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34 | namespace HeuristicLab.Algorithms.DataAnalysis.SymRegGrammarEnumeration {
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35 | [Item("RSquaredEvaluator", "")]
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36 | [StorableClass]
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37 | public class RSquaredEvaluator : ParameterizedNamedItem, IGrammarEnumerationEvaluator {
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38 | private readonly string OptimizeConstantsParameterName = "Optimize Constants";
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39 | private readonly string ApplyLinearScalingParameterName = "Apply Linear Scaling";
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40 | private readonly string ConstantOptimizationIterationsParameterName = "Constant Optimization Iterations";
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41 | private readonly string RestartsParameterName = "Restarts";
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42 | private readonly string SeedParameterName = "Seed"; // seed for the random number generator
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43 |
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44 | private readonly MersenneTwister random = new MersenneTwister();
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45 |
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46 | #region parameter properties
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47 | public IFixedValueParameter<BoolValue> OptimizeConstantsParameter {
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48 | get { return (IFixedValueParameter<BoolValue>)Parameters[OptimizeConstantsParameterName]; }
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49 | }
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50 |
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51 | public IFixedValueParameter<BoolValue> ApplyLinearScalingParameter {
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52 | get { return (IFixedValueParameter<BoolValue>)Parameters[ApplyLinearScalingParameterName]; }
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53 | }
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54 |
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55 | public IFixedValueParameter<IntValue> ConstantOptimizationIterationsParameter {
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56 | get { return (IFixedValueParameter<IntValue>)Parameters[ConstantOptimizationIterationsParameterName]; }
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57 | }
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58 |
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59 | private IFixedValueParameter<IntValue> RestartsParameter {
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60 | get { return (IFixedValueParameter<IntValue>)Parameters[RestartsParameterName]; }
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61 | }
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62 |
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63 | private int Restarts {
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64 | get { return RestartsParameter.Value.Value; }
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65 | set { RestartsParameter.Value.Value = value; }
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66 | }
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67 |
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68 | public bool OptimizeConstants {
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69 | get { return OptimizeConstantsParameter.Value.Value; }
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70 | set { OptimizeConstantsParameter.Value.Value = value; }
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71 | }
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72 |
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73 | public bool ApplyLinearScaling {
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74 | get { return ApplyLinearScalingParameter.Value.Value; }
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75 | set { ApplyLinearScalingParameter.Value.Value = value; }
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76 | }
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77 |
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78 | public int ConstantOptimizationIterations {
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79 | get { return ConstantOptimizationIterationsParameter.Value.Value; }
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80 | set { ConstantOptimizationIterationsParameter.Value.Value = value; }
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81 | }
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82 | #endregion
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83 |
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84 | private static readonly ISymbolicDataAnalysisExpressionTreeInterpreter expressionTreeLinearInterpreter = new SymbolicDataAnalysisExpressionTreeLinearInterpreter();
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85 |
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86 | public RSquaredEvaluator() {
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87 | Parameters.Add(new FixedValueParameter<BoolValue>(OptimizeConstantsParameterName, "Run constant optimization in sentence evaluation.", new BoolValue(false)));
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88 | Parameters.Add(new FixedValueParameter<BoolValue>(ApplyLinearScalingParameterName, "Apply linear scaling on the tree model during evaluation.", new BoolValue(false)));
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89 | Parameters.Add(new FixedValueParameter<IntValue>(ConstantOptimizationIterationsParameterName, "Number of gradient descent iterations.", new IntValue(10)));
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90 | Parameters.Add(new FixedValueParameter<IntValue>(RestartsParameterName, "Number of restarts for gradient descent.", new IntValue(10)));
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91 |
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92 | var seedParameter = new FixedValueParameter<IntValue>(SeedParameterName, "Seed value for random restarts.", new IntValue(0));
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93 | seedParameter.Value.ValueChanged += (sender, args) => random.Seed((uint)seedParameter.Value.Value);
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94 | random.Seed(0u);
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95 |
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96 | Parameters.Add(seedParameter);
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97 | }
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98 |
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99 | [StorableConstructor]
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100 | protected RSquaredEvaluator(bool deserializing) : base(deserializing) { }
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101 |
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102 | protected RSquaredEvaluator(RSquaredEvaluator original, Cloner cloner) : base(original, cloner) {
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103 | }
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104 |
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105 | public override IDeepCloneable Clone(Cloner cloner) {
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106 | return new RSquaredEvaluator(this, cloner);
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107 | }
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108 |
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109 | public double Evaluate(IRegressionProblemData problemData, Grammar grammar, SymbolList sentence) {
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110 | var tree = grammar.ParseSymbolicExpressionTree(sentence);
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111 | return Evaluate(problemData, tree);
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112 | }
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113 |
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114 | public double Evaluate(IRegressionProblemData problemData, ISymbolicExpressionTree tree) {
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115 | return Evaluate(problemData, tree, random, OptimizeConstants, ConstantOptimizationIterations, ApplyLinearScaling, Restarts);
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116 | }
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117 |
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118 | public static double Evaluate(IRegressionProblemData problemData, ISymbolicExpressionTree tree, IRandom random, bool optimizeConstants = true, int maxIterations = 10, bool applyLinearScaling = false, int restarts = 1) {
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119 | // we begin with an evaluation without constant optimization (relatively small speed penalty compared to const opt)
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120 | // this value will be used as a baseline to decide if an improvement was achieved via const opt
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121 | double r2 = SymbolicRegressionSingleObjectivePearsonRSquaredEvaluator.Calculate(expressionTreeLinearInterpreter,
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122 | tree,
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123 | double.MinValue,
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124 | double.MaxValue,
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125 | problemData,
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126 | problemData.TrainingIndices,
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127 | applyLinearScaling: applyLinearScaling);
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128 |
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129 | // restart const opt and try to obtain an improved r2 value
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130 | if (optimizeConstants) {
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131 | int count = 0;
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132 | double optimized = r2;
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133 | do {
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134 | foreach (var constantNode in tree.IterateNodesPrefix().OfType<ConstantTreeNode>()) {
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135 | constantNode.ResetLocalParameters(random);
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136 | }
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137 |
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138 | optimized = SymbolicRegressionConstantOptimizationEvaluator.OptimizeConstants(
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139 | expressionTreeLinearInterpreter,
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140 | tree,
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141 | problemData,
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142 | problemData.TrainingIndices,
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143 | applyLinearScaling,
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144 | maxIterations,
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145 | false,
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146 | double.MinValue,
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147 | double.MaxValue,
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148 | true);
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149 | } while (optimized <= r2 && ++count < restarts);
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150 |
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151 | // do not update constants if quality is not improved
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152 | if (optimized > r2) {
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153 | r2 = optimized;
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154 |
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155 | // is this code really necessary ?
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156 | foreach (var symbolicExpressionTreeNode in tree.IterateNodesPostfix()) {
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157 | ConstantTreeNode constTreeNode = symbolicExpressionTreeNode as ConstantTreeNode;
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158 | if (constTreeNode != null && constTreeNode.Value.IsAlmost(0.0)) {
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159 | constTreeNode.Value = 0.0;
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160 | }
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161 | }
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162 | }
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163 | }
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164 | return double.IsNaN(r2) || double.IsInfinity(r2) ? 0.0 : r2;
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165 | }
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166 | }
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167 | }
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