#region License Information
/* HeuristicLab
* Copyright (C) 2002-2014 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
*
* This file is part of HeuristicLab.
*
* HeuristicLab is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* HeuristicLab is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with HeuristicLab. If not, see .
*/
#endregion
using System;
using System.Collections.Generic;
using System.Drawing;
using System.IO;
using System.Linq;
using System.Text;
using HeuristicLab.Common;
using HeuristicLab.Core;
using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
namespace HeuristicLab.EvolutionTracking {
[StorableClass]
[Item("GenealogyGraph", "A class representing a genealogy graph")]
public class GenealogyGraph : DirectedGraph, IGenealogyGraph {
private Dictionary contentMap;
private Dictionary idMap;
private readonly Comparison> compareArcs = (a, b) => {
var da = a.Data;
var db = b.Data;
if ((da == null && db == null) || (da != null && db != null))
return 0;
if (da == null)
return -1;
return 1;
};
protected Dictionary> ranks;
public IEnumerable>> Ranks {
get { return ranks.Select(x => new KeyValuePair>(x.Key, x.Value)); }
}
public IEnumerable GetByRank(double rank) {
return ranks.ContainsKey(rank) ? ranks[rank] : Enumerable.Empty();
}
protected GenealogyGraph(GenealogyGraph original, Cloner cloner)
: base(original, cloner) {
RebuildDictionaries();
// sort arcs so that in the case of crossover (child vertex with two parents)
// the arc which holds the fragment information is always last
foreach (var arcList in base.Vertices.Select(v => (List)v.InArcs)) {
arcList.Sort((a, b) => compareArcs((IGenealogyGraphArc)a, (IGenealogyGraphArc)b));
}
}
public override IDeepCloneable Clone(Cloner cloner) {
return new GenealogyGraph(this, cloner);
}
[StorableConstructor]
protected GenealogyGraph(bool deserializing)
: base(deserializing) {
}
[StorableHook(HookType.AfterDeserialization)]
private void AfterDeserialization() {
RebuildDictionaries();
foreach (var arcList in base.Vertices.Select(v => (List)v.InArcs)) {
arcList.Sort((a, b) => compareArcs((IGenealogyGraphArc)a, (IGenealogyGraphArc)b));
}
}
public GenealogyGraph() {
ranks = new Dictionary>();
contentMap = new Dictionary();
idMap = new Dictionary();
}
new public IEnumerable Vertices {
get { return base.Vertices.Select(x => (IGenealogyGraphNode)x); }
}
new public IEnumerable Arcs {
get { return base.Arcs.Select(x => (IGenealogyGraphArc)x); }
}
public override IArc AddArc(IVertex source, IVertex target) {
var arc = new GenealogyGraphArc((IGenealogyGraphNode)source, (IGenealogyGraphNode)target);
base.AddArc(arc);
return arc;
}
public override void AddVertex(IVertex vertex) {
base.AddVertex(vertex);
var genealogyGraphNode = (IGenealogyGraphNode)vertex;
if (contentMap.ContainsKey(genealogyGraphNode.Data))
throw new InvalidOperationException("Duplicate content is not allowed in the genealogy graph.");
contentMap[genealogyGraphNode.Data] = genealogyGraphNode;
if (idMap.ContainsKey(genealogyGraphNode.Id))
throw new InvalidOperationException("Duplicate ids are not allowed in the genealogy graph.");
idMap[genealogyGraphNode.Id] = genealogyGraphNode;
if (!ranks.ContainsKey(genealogyGraphNode.Rank))
ranks[genealogyGraphNode.Rank] = new List();
ranks[genealogyGraphNode.Rank].Add(genealogyGraphNode);
}
public override void RemoveVertex(IVertex vertex) {
var node = (IGenealogyGraphNode)vertex;
contentMap.Remove(node.Data);
idMap.Remove(node.Id);
if (ranks.ContainsKey(node.Rank)) {
ranks[node.Rank].Remove(node); // this call will be slow, use with caution
if (!ranks[node.Rank].Any())
ranks.Remove(node.Rank);
}
base.RemoveVertex(vertex);
}
public override void RemoveVertices(IEnumerable vertices) {
foreach (var v in vertices)
this.RemoveVertex(v);
}
public IGenealogyGraphNode GetByContent(object content) {
IGenealogyGraphNode result;
contentMap.TryGetValue(content, out result);
return result;
}
public IGenealogyGraphNode GetById(string id) {
IGenealogyGraphNode result;
idMap.TryGetValue(id, out result);
return result;
}
public bool Contains(object content) {
return contentMap.ContainsKey(content);
}
public event EventHandler GraphUpdated;
private void OnGraphUpdated(object sender, EventArgs args) {
var updated = GraphUpdated;
if (updated != null) updated(sender, args);
}
public override void Clear() {
base.Clear();
ranks.Clear();
contentMap.Clear();
idMap.Clear();
}
private void RebuildDictionaries() {
contentMap = new Dictionary();
idMap = new Dictionary();
ranks = new Dictionary>();
foreach (var v in Vertices) {
contentMap[v.Data] = v;
idMap[v.Id] = v;
if (ranks.ContainsKey(v.Rank)) {
ranks[v.Rank].Add(v);
} else {
ranks[v.Rank] = new List { v };
}
}
}
public void ExportDot(string path) {
var sb = new StringBuilder();
sb.AppendLine("graph fragmentgraph {");
foreach (var v in Vertices) {
double width = Math.Max(0.5, v.Degree);
sb.AppendLine("\"" + v.Id + "\"[shape=circle, style = filled, width = " + width + ", label = " + v.Rank + "\n" + String.Format("{0:00}", v.Quality) + ", fillcolor = \"" + ColorTranslator.ToHtml(GetColor(v)) + "\"]");
}
foreach (var a in Arcs) {
sb.AppendLine("\"" + a.Source.Id + "\" -- \"" + a.Target.Id + "\"");
}
sb.AppendLine("}");
File.WriteAllText(path, sb.ToString());
}
private Color GetColor(IGenealogyGraphNode node) {
var colorIndex = (int)Math.Round(node.Quality * ColorGradient.Colors.Count);
if (colorIndex >= ColorGradient.Colors.Count) return ColorGradient.Colors.Last();
return ColorGradient.Colors[colorIndex];
}
}
[Item("GenealogyGraph", "A genealogy graph in which the vertex data is of type T")]
[StorableClass]
public class GenealogyGraph : GenealogyGraph, IGenealogyGraph where T : class, IItem {
public GenealogyGraph() { }
private GenealogyGraph(GenealogyGraph original, Cloner cloner)
: base(original, cloner) {
}
public override IDeepCloneable Clone(Cloner cloner) {
return new GenealogyGraph(this, cloner);
}
new public IEnumerable> Vertices {
get { return base.Vertices.Select(x => (IGenealogyGraphNode)x); }
}
new public IGenealogyGraphNode GetByContent(object content) {
return (IGenealogyGraphNode)base.GetByContent(content);
}
new public IGenealogyGraphNode GetById(string id) {
return (IGenealogyGraphNode)base.GetById(id);
}
new public IEnumerable> GetByRank(double rank) {
return base.GetByRank(rank).Select(x => (IGenealogyGraphNode)x);
}
public new IEnumerable>>> Ranks {
get { return base.Ranks.Select(x => new KeyValuePair>>(x.Key, x.Value.Select(n => (IGenealogyGraphNode)n))); }
}
}
}