#region License Information
/* HeuristicLab
* Copyright (C) 2002-2019 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
*
* This file is part of HeuristicLab.
*
* HeuristicLab is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* HeuristicLab is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with HeuristicLab. If not, see .
*/
#endregion
using System;
using System.Collections.Generic;
using System.Linq;
using HeuristicLab.Common;
namespace HeuristicLab.Analysis.Statistics {
public static class KernelDensityEstimator {
public static double[] Density(double[] x, double mean, double stdDev) {
return x.Select(xi => Density(xi, mean, stdDev)).ToArray();
}
public static double Density(double x, double mean, double stdDev) {
return (1.0 / (stdDev * Math.Sqrt(2.0 * Math.PI))) *
Math.Exp(-((Math.Pow(x - mean, 2.0)) /
(2.0 * Math.Pow(stdDev, 2.0))));
}
// the scale (sigma) of the kernel is a parameter
public static List> Density(double[] x, int nrOfPoints, double stepWidth, double sigma = 1.0) {
// calculate grid for which to estimate the density
double[] newX = new double[nrOfPoints];
double margin = stepWidth * 2;
double dataMin = x.Min() - margin;
double dataMax = x.Max() + margin;
double diff = (dataMax - dataMin) / nrOfPoints;
double cur = dataMin;
newX[0] = cur;
for (int i = 1; i < nrOfPoints; i++) {
cur += diff;
newX[i] = cur;
}
// for each of the points for which we want to calculate the density
// we sum up all the densities of the observed points assuming they are at the center of a normal distribution
var y = from xi in newX
select (from obsX in x
select Density(xi, obsX, sigma)).Sum();
return newX.Zip(y, Tuple.Create).ToList();
}
//Silverman's rule of thumb for bandwidth estimation (sigma)
public static double EstimateBandwidth(double[] x) {
return 1.06 * x.StandardDeviation() * Math.Pow(x.Length, -0.2);
}
}
}