#region License Information /* HeuristicLab * Copyright (C) 2002-2019 Heuristic and Evolutionary Algorithms Laboratory (HEAL) * * This file is part of HeuristicLab. * * HeuristicLab is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * HeuristicLab is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with HeuristicLab. If not, see . */ #endregion using System; using System.Collections.Generic; using System.Linq; using HeuristicLab.Common; namespace HeuristicLab.Analysis.Statistics { public static class KernelDensityEstimator { public static double[] Density(double[] x, double mean, double stdDev) { return x.Select(xi => Density(xi, mean, stdDev)).ToArray(); } public static double Density(double x, double mean, double stdDev) { return (1.0 / (stdDev * Math.Sqrt(2.0 * Math.PI))) * Math.Exp(-((Math.Pow(x - mean, 2.0)) / (2.0 * Math.Pow(stdDev, 2.0)))); } // the scale (sigma) of the kernel is a parameter public static List> Density(double[] x, int nrOfPoints, double stepWidth, double sigma = 1.0) { // calculate grid for which to estimate the density double[] newX = new double[nrOfPoints]; double margin = stepWidth * 2; double dataMin = x.Min() - margin; double dataMax = x.Max() + margin; double diff = (dataMax - dataMin) / nrOfPoints; double cur = dataMin; newX[0] = cur; for (int i = 1; i < nrOfPoints; i++) { cur += diff; newX[i] = cur; } // for each of the points for which we want to calculate the density // we sum up all the densities of the observed points assuming they are at the center of a normal distribution var y = from xi in newX select (from obsX in x select Density(xi, obsX, sigma)).Sum(); return newX.Zip(y, Tuple.Create).ToList(); } //Silverman's rule of thumb for bandwidth estimation (sigma) public static double EstimateBandwidth(double[] x) { return 1.06 * x.StandardDeviation() * Math.Pow(x.Length, -0.2); } } }