Changeset 11926

Timestamp:

02/05/15 23:16:30 (9 years ago)

Author:

bburlacu

Message:

#1772: Merged trunk changes.

Location:

branches/HeuristicLab.EvolutionTracking

Files:

• HeuristicLab.Problems.DataAnalysis.Symbolic (modified) (1 prop)
• HeuristicLab.Problems.DataAnalysis.Symbolic.Views (modified) (1 prop)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisPopulationDiversityAnalyzer.cs (copied) (copied from trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisPopulationDiversityAnalyzer.cs)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Formatters/SymbolicDataAnalysisExpressionExcelFormatter.cs (modified) (1 diff)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4.csproj (modified) (2 diffs)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Matching (deleted)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisProblem.cs (modified) (4 diffs)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/TreeMatching (copied) (copied from trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/TreeMatching)

branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Formatters/SymbolicDataAnalysisExpressionExcelFormatter.cs

@@ -215 +215 @@
         double threshold = variableConditionTreeNode.Threshold;
         double slope = variableConditionTreeNode.Slope;
-        string p = "(1 / (1 + EXP(-" + slope.ToString(CultureInfo.InvariantCulture) + "* (" + GetColumnToVariableName(variableConditionTreeNode.VariableName) + "-" + threshold.ToString(CultureInfo.InvariantCulture) + "))))";
-        stringBuilder.Append("INT((");
+        string p = "(1 / (1 + EXP(-" + slope.ToString(CultureInfo.InvariantCulture) + " * (" + GetColumnToVariableName(variableConditionTreeNode.VariableName) + "-" + threshold.ToString(CultureInfo.InvariantCulture) + "))))";
+        stringBuilder.Append("((");
         stringBuilder.Append(FormatRecursively(node.GetSubtree(0)));
         stringBuilder.Append("*");

branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4.csproj

@@ -204 +204 @@
     <Compile Include="Importer\Token.cs" />
     <Compile Include="Interfaces\IModelBacktransformator.cs" />
-    <Compile Include="Interfaces\ISymbolicDataAnalysisExpressionSimilarityCalculator.cs" />
-    <Compile Include="Matching\SymbolicExpressionTreeCanonicalSorter.cs" />
-    <Compile Include="Matching\SymbolicExpressionTreeEqualityComparer.cs" />
-    <Compile Include="Matching\SymbolicExpressionTreeMatching.cs" />
-    <Compile Include="Matching\SymbolicExpressionTreeMaxCommonSequenceCalculator.cs" />
-    <Compile Include="Matching\SymbolicExpressionTreeNodeComparer.cs" />
-    <Compile Include="Matching\SymbolicExpressionTreeNodeSimilarityComparer.cs" />
     <Compile Include="SimilarityCalculators\BottomUpSimilarityCalculator.cs" />
     <Compile Include="SimilarityCalculators\MaxCommonSubtreeSimilarityCalculator.cs" />
@@ -321 +314 @@
     <Compile Include="Tracking\TraceCalculator.cs" />
     <Compile Include="TransformationToSymbolicTreeMapper.cs" />
-    <Compile Include="Tracking\SymbolicDataAnalysisExpressionAfterCrossoverOperator.cs" />
-    <Compile Include="Tracking\SymbolicDataAnalysisExpressionBeforeCrossoverOperator.cs" />
-    <Compile Include="Tracking\SymbolicDataAnalysisExpressionAfterManipulatorOperator.cs" />
-    <Compile Include="Tracking\SymbolicDataAnalysisExpressionBeforeManipulatorOperator.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreeBottomUpSimilarityCalculator.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreeCanonicalSorter.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreeEqualityComparer.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreeMatching.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreeMaxCommonSubtreeSimilarityCalculator.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreeNodeComparer.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreeNodeEqualityComparer.cs" />
     <None Include="HeuristicLab.snk" />
     <None Include="Plugin.cs.frame" />

branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisProblem.cs

@@ -23 +23 @@
 using System.Drawing;
 using System.Linq;
+using HeuristicLab.Analysis;
 using HeuristicLab.Common;
 using HeuristicLab.Common.Resources;
@@ -29 +30 @@
 using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
 using HeuristicLab.Optimization;
+using HeuristicLab.Optimization.Operators;
 using HeuristicLab.Parameters;
 using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
@@ -232 +234 @@
       Operators.Add(new MinAverageMaxSymbolicExpressionTreeLengthAnalyzer());
       Operators.Add(new SymbolicExpressionTreeLengthAnalyzer());
-      Operators.Add(new SymbolicDataAnalysisPhenotypicDiversityAnalyzer());
-      Operators.Add(new SymbolicDataAnalysisBottomUpDiversityAnalyzer());
-      Operators.Add(new SymbolicDataAnalysisGenealogyAnalyzer());
+      Operators.Add(new SingleObjectivePopulationDiversityAnalyzer());
       ParameterizeOperators();
     }
@@ -354 +354 @@
         op.EvaluatorParameter.ActualName = EvaluatorParameter.Name;
       }
-      // add tracking analyzer
-      foreach (var op in operators.OfType<SymbolicDataAnalysisGenealogyAnalyzer>()) {
-        op.BeforeCrossoverOperatorParameter.ActualValue = new SymbolicDataAnalysisExpressionBeforeCrossoverOperator();
-        op.AfterCrossoverOperatorParameter.ActualValue = new SymbolicDataAnalysisExpressionAfterCrossoverOperator();
-        op.BeforeManipulatorOperatorParameter.ActualValue = new SymbolicDataAnalysisExpressionBeforeManipulatorOperator();
-        op.AfterManipulatorOperatorParameter.ActualValue = new SymbolicDataAnalysisExpressionAfterManipulatorOperator();
-        // get crossover parameter names
-        var crossover = operators.OfType<ISymbolicExpressionTreeCrossover>().FirstOrDefault();
-        if (crossover != null) {
-          op.BeforeCrossoverOperator.ParentsParameter.ActualName = crossover.ParentsParameter.Name;
-          op.AfterCrossoverOperator.ParentsParameter.ActualName = crossover.ParentsParameter.Name;
-          op.BeforeCrossoverOperator.ChildParameter.ActualName = crossover.ChildParameter.Name;
-          op.AfterCrossoverOperator.ChildParameter.ActualName = crossover.ChildParameter.Name;
-        }
-        // get manipulator parameter names
-        var manipulator = operators.OfType<ISymbolicExpressionTreeManipulator>().FirstOrDefault();
-        if (manipulator != null) {
-          op.BeforeManipulatorOperator.ChildParameter.ActualName = manipulator.SymbolicExpressionTreeParameter.Name;
-          op.AfterManipulatorOperator.ChildParameter.ActualName = manipulator.SymbolicExpressionTreeParameter.Name;
-        }
-        var creator = operators.OfType<ISymbolicExpressionTreeCreator>().FirstOrDefault();
-        if (creator != null) {
-          op.PopulationParameter.ActualName = creator.SymbolicExpressionTreeParameter.ActualName;
-        }
+      foreach (var op in operators.OfType<SingleObjectiveSolutionSimilarityCalculator>()) {
+        op.QualityVariableName = "Quality";
+        op.SolutionVariableName = SolutionCreator.SymbolicExpressionTreeParameter.ActualName;
+      }
+      foreach (var op in operators.OfType<SingleObjectivePopulationDiversityAnalyzer>()) {
+        op.SimilarityCalculator = new SymbolicExpressionTreeBottomUpSimilarityCalculator();
       }
     }